介绍
脚本通过读取组装序列,对序列个数、GC含量、最小最大长度、平均长度、N50等进行统计
输入
组装序列
结果
# Counts of transcripts, etc.
Total trinity 'genes': 67
Total trinity transcripts: 85
Percent GC: 49.52
#Stats based on ALL transcript contigs:
Contig N10: 8757
Contig N20: 8060
Contig N30: 6692
Contig N40: 5534
Contig N50: 5399
Median contig length: 466
Average contig: 1678.48
Total assembled bases: 142671
# Stats based on ONLY LONGEST ISOFORM per 'GENE':
Contig N10: 8816
Contig N20: 7195
Contig N30: 5534
Contig N40: 5528
Contig N50: 3739
Median contig length: 349
Average contig: 1131.12
Total assembled bases: 75785