反馈咨询
欢迎添加微信!
微信号:z_gqing
微信二维码:

介绍

RepeatMasker Developed by Arian Smit and Robert Hubley Please refer to: Smit, AFA, Hubley, R. & Green, P "RepeatMasker" at http://www.repeatmasker.org RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences. The output of the program is a detailed annotation of the repeats that are present in the query sequence as well as a modified version of the query sequence in which all the annotated repeats have been masked (default: replaced by Ns). Sequence comparisons in RepeatMasker are performed by the program cross_match, an efficient implementation of the Smith-Waterman-Gotoh algorithm developed by Phil Green, or by WU-Blast developed by Warren Gish

输入

fasta格式例如(可以是多条序列): >seq1 AAAAAAAAGCTACTTGGAGTACCAATAATAAAGTGAGCCCACCTTCCTGGTACCCAGACATTTC

结果

*.tbl 重复序列预测结果 *.masked 屏蔽掉重复序列的新序列 *.out 重复序列预测结果整理后的表格
生信通明 木牛零码 NGplot Newmer生信 公司产品
Copyright © 2021-2024 上海牛马人生物科技有限公司 沪ICP备 2022007390号-2