介绍
使用minCED软件做CRISPRs分析。可用于基因组或宏基因组数据。
输入
基因组序列:
例如,
>tig00000462_pilon_pilon
CCAGCACCGGGTGGCCGTTGCGCCGCGCGTCCGACAGCCGCTCCAGCAGCAGCATGCCCACACCCTCGCCCCAGCCCGTG
CCGTCCGCGGCGGCCGCGAACGCCTTGCACCGGCCGTCCGGCGCGAGACCCCGCTGACGGCTGAACTCCACGAAGAGGCC
GGGCGTGGACATCACGGTCACGCCACCGGCGAG...
结果
结果文件示例
Sequence 'tig00000462_pilon_pilon' (8900851 bp)
CRISPR 1 Range: 79635 - 79720
POSITION REPEAT SPACER
-------- ----------------------- ----------------------------------------
79635 CTTCGCCCTCGCCGTGGCCGCCT TCGCCCTCACCCTGGCGGCCTTCGCCCTCACCCCGGCCGC [ 23, 40 ]
79698 CTTCGCCCTCGCCGTGGCCGCCT
-------- ----------------------- ----------------------------------------
Repeats: 2 Average Length: 23 Average Length: 40
CRISPR 2 Range: 471329 - 471425
POSITION REPEAT SPACER
-------- ---------------------------------- -----------------------------
471329 CGCTGACGCCGGTATCGGTGCCGCTGACGCCGGT ATCGGTGCCGCTGACGCCGGTATCGGTGC [ 34, 29 ]
471392 CGCTGACGCCGGTATCGGTGCCGCTGACGCCGGT
-------- ---------------------------------- -----------------------------
Repeats: 2 Average Length: 34 Average Length: 29