介绍
使用metagene软件,快速的宏基因组基因预测
输入
基因组序列(fasta格式)
例如
>scaffold3
AAAAAAAAGCTACTTGGAGTACCAATAATAAAGTGAGCCCACCTTCCTGGTACCCAGACATTTC...
>scaffold4
GGAGTACCAATAATAAAGTGAGCCCACCTTCCTGGTACCCAGAC...
结果
文件例如:
# scaffold4 61.7
# gc = 0.698128
# bacteria
1 4513 - 0 539.403 partial (lack 3'-end)
4450 5127 - 0 37.5313 complete
# scaffold3 61.3
# gc = 0.738649
# bacteria
1 85 - 0 10.6447 partial (lack 3'-end)
30 2327 + 0 433.438 complete
2354 9268 + 0 1287.43 complete
9184 9295 + 0 20.3604 partial (lack 3'-end)