Comment on Curr Biol. 2021 Oct 25;31(20):4608-4619.e3.

All biological processes including movement, digestion, and thought require energy, and the metabolic activity necessary to generate that energy also generates waste. Metabolic by-products, including a variety of proteins, accumulate in the tissue and can be harmful if not removed. Throughout the body, the lymphatic system is responsible for clearing metabolic waste from the tissue (Figure 1). An ultrafiltrate of blood plasma constantly enters the tissue from the microvasculature and percolates through the tissue before uptake by lymphatic capillaries. Once in these capillaries, a series of lymphatic vessels, pumps, and valves ensures directional fluid movement, ultimately draining the lymph containing waste products back into the venous circulatory system. The liver can be regarded as the ultimate recycling station in the body, where these waste products are either degraded or reused.

Comment in Curr Biol. 2021 Oct 25;31(20):R1395-R1397.

In the developing central nervous system, electrical signaling is thought to rely exclusively on differentiating neurons as they acquire the ability to generate and propagate action potentials. Accordingly, neuroepithelial progenitors (NEPs), which give rise to all neurons and glial cells during development, have been reported to remain electrically passive. Here, we investigated the physiological properties of NEPs at the onset of spontaneous neural activity (SNA) initiating motor behavior in mouse embryonic spinal cord. Using patch-clamp recordings, we discovered that spinal NEPs exhibit spontaneous membrane depolarizations during episodes of SNA. These rhythmic depolarizations exhibited a ventral-to-dorsal gradient with the highest amplitude located in the floor plate, the ventral-most part of the neuroepithelium. Paired recordings revealed that NEPs are coupled via gap junctions and form an electrical syncytium. Although other NEPs were electrically passive, we discovered that floor-plate NEPs generated large Na+/Ca2+ action potentials. Unlike in neurons, floor-plate action potentials relied primarily on the activation of voltage-gated T-type calcium channels (TTCCs). In situ hybridization showed that all 3 known subtypes of TTCCs are predominantly expressed in the floor plate. During SNA, we found that acetylcholine released by motoneurons rhythmically triggers floor-plate action potentials by acting through nicotinic acetylcholine receptors. Finally, by expressing the genetically encoded calcium indicator GCaMP6f in the floor plate, we demonstrated that neuroepithelial action potentials are associated with calcium waves and propagate along the entire length of the spinal cord. Our work reveals a novel physiological mechanism to generate and propagate electrical signals across a neural structure independently from neurons.

Comment in Curr Biol. 2021 Oct 25;31(20):R1383-R1385.

As neural signals travel through the visual hierarchy, spatial precision decreases and specificity for stimulus features increases.1-4 A similar hierarchy has been found for laminar processing in V1, where information from the thalamus predominantly targets the central layers, while spatial precision decreases and feature specificity increases toward superficial and deeper layers.5-17 This laminar processing scheme is proposed to represent a canonical cortical microcircuit that is similar across the cortex.11,18-21 Here, we go beyond early visual cortex and investigate whether processing of numerosity (the set size of a group of items) across cortical depth in the parietal association cortex follows this hypothesis. Numerosity processing is implicated in many tasks such as multiple object tracking,22 mathematics,23-25 decision making,26 and dividing attention.27 Neurons in the parietal association cortex are tuned to numerosity, with both a preferred numerosity tuning and tuning width (i.e., specificity).28-30 We quantified preferred numerosity responses across cortical depth in the parietal association cortex with ultra-high field fMRI and population receptive field-based numerosity modeling.1,28,31 We find that numerosity responses sharpen, i.e., become increasingly specific, moving away from the central layers. This suggests that the laminar processing scheme for numerosity processing in the parietal cortex is similar to primary visual cortex, providing support for the canonical cortical microcircuit hypothesis beyond primary visual cortex.

As humanity is facing the double challenge of species extinctions and climate change, designating parts of forests as protected areas is a key conservation strategy.1-4 Protected areas, encompassing 14.9% of the Earth's land surface and 19% of global forests, can prevent forest loss but do not do so perfectly everywhere.5-12 The reasons why protection only works in some areas are difficult to generalize: older and newer parks, protected areas with higher and lower suitability for agriculture, and more and less strict protection can be more effective at preventing forest loss than their counterparts.6,8,9,12-16 Yet predicting future forest loss within protected areas is crucial to proactive conservation. Here, we identify an early warning sign of subsequent forest loss, based on forest loss patterns in strict protected areas and their surrounding landscape worldwide, from 2000 to 2018.17,18 We found that a low level in the absolute forest cover immediately outside of a protected area signals a high risk of future forest loss inside the protected area itself. When the amount of forest left outside drops to <20%, the protected area is likely to experience rates of forest loss matching those in the wider landscape, regardless of its protection status (e.g., 5% loss outside will be matched by 5% loss inside). This knowledge could be used to direct funding to protected areas threatened by imminent forest loss, helping to proactively bolster protection to prevent forest loss, especially in countries where detailed information is lacking.

Humans reason not only about actual events (what is), but also about possible events (what could be). Many key operations of human cognition involve the representation of possibilities, including moral judgment, future planning, and causal understanding1. But little is known about the evolutionary roots of this kind of thought. Humans' closest relatives, chimpanzees, possess several cognitive abilities that are closely related to reasoning about alternatives: they plan for the future2, evaluate other's actions3, and reason causally4. However, in the first direct test of the ability to consider alternatives, Redshaw and Suddendorf5 claim that chimpanzees are not able to represent alternative possibilities. Here, using a novel method, we challenge this conclusion: our results suggest that, like human cognition, chimpanzee thought is not limited to what is, but also involves reasoning about what could be the case.

Steve Brusatte introduces Spinosaurus, the largest known predatory dinosaur.

Comment in Curr Biol. 2021 Oct 25;31(20):R1388-R1390.

Vocal communication signals can provide listeners with information about the signaler and elicit motivated responses. Auditory cortical and mesolimbic reward circuits are often considered to have distinct roles in these processes, with auditory cortical circuits responsible for detecting and discriminating sounds and mesolimbic circuits responsible for ascribing salience and modulating preference for those sounds. Here, we investigated whether dopamine within auditory cortical circuits themselves can shape the incentive salience of a vocal signal. Female zebra finches demonstrate natural preferences for vocal signals produced by males ("songs"), and we found that brief pairing of passive song playback with pharmacological dopamine manipulations in the secondary auditory cortex significantly altered song preferences. In particular, pairing passive song playback with retrodialysis of dopamine agonists into the auditory cortex enhanced preferences for less-preferred songs. Plasticity of song preferences by dopamine persisted for at least 1 week and was mediated by D1 receptors. In contrast, song preferences were not shaped by norepinephrine. In line with this, while we found that the ventral tegmental area, substantia nigra pars compacta, and locus coeruleus all project to the secondary auditory cortex, only dopamine-producing neurons in the ventral tegmental area differentially responded to preferred versus less-preferred songs. In contrast, norepinephrine neurons in the locus coeruleus increased expression of activity-dependent neural markers for both preferred and less-preferred songs. These data suggest that dopamine acting directly in sensory-processing areas can shape the incentive salience of communication signals.

Stomata evolved as plants transitioned from water to land, enabling carbon dioxide uptake and water loss to be controlled. In flowering plants, the most recently divergent land plant lineage, stomatal pores actively close in response to drought. In this response, the phytohormone abscisic acid (ABA) triggers signaling cascades that lead to ion and water loss in the guard cells of the stomatal complex, causing a reduction in turgor and pore closure. Whether this stimulus-response coupling pathway acts in other major land plant lineages is unclear, with some investigations reporting that stomatal closure involves ABA but others concluding that closure is passive. Here, we show that in the model fern Ceratopteris richardii active stomatal closure is conditional on sensitization by pre-exposure to either low humidity or exogenous ABA and is promoted by ABA. RNA-seq analysis and de novo transcriptome assembly reconstructed the protein-coding complement of the C. richardii genome, with coverage comparable to other plant models, enabling transcriptional signatures of stomatal sensitization and closure to be inferred. In both cases, changes in abundance of homologs of ABA, Ca2+, and ROS-related signaling components were observed, suggesting that the closure-response pathway is conserved in ferns and flowering plants. These signatures further suggested that sensitization is achieved by lowering the threshold required for a subsequent closure-inducing signal to trigger a response. We conclude that the canonical signaling network for active stomatal closure functioned in at least a rudimentary form in the stomata of the last common ancestor of ferns and flowering plants.

Encoding and retaining novel sequences of sensory stimuli in working memory is crucial for adaptive behavior. A fundamental challenge for the central nervous system is to maintain each sequence item in an active and discriminable state, while also preserving their temporal context. Nested neural oscillations have been postulated to disambiguate the "what" and "when" of sequences, but the mechanisms by which these multiple streams of information are coordinated in the human brain remain unclear. Drawing from foundational animal studies, we recorded local field potentials from the human piriform cortex and hippocampus during a working memory task in which subjects experienced sequences of three distinct odors. Our data revealed a unique organization of odor memories across multiple timescales of the theta rhythm. During encoding, odors elicited greater gamma at distinct theta phases in both regions, time stamping their positions in the sequence, whereby the robustness of this effect was predictive of temporal order memory. During maintenance, stimulus-driven patterns of theta-coupled gamma were spontaneously reinstated in piriform cortex, recapitulating the order of the initial sequence. Replay events were time compressed across contiguous theta cycles, coinciding with periods of enhanced piriform-hippocampal theta-phase synchrony, and their prevalence forecasted subsequent recall accuracy on a trial-by-trial basis. Our data provide a novel link between endogenous replay orchestrated by the theta rhythm and short-term retention of sequential memories in the human brain.

Our perceptual ability remarkably improves with training. Some studies on visual perceptual learning have shown refined neural representation of the trained stimulus in the visual cortex, whereas others have exclusively argued for improved readout and decision-making processes in the frontoparietal cortex. The mixed results have rendered the underlying neural mechanisms puzzling and hotly debated. By simultaneously recording from monkey visual area V4 and ventrolateral prefrontal cortex (PFC) implanted with microelectrode arrays, we dissected learning-induced cortical changes over the course of training the monkeys in a global form detection task. Decoding analysis dissociated two distinct components of neuronal population codes that were progressively and markedly enhanced in both V4 and PFC. One component was closely related to the target stimulus feature and was subject to task-dependent top-down modulation; it emerged earlier in V4 than PFC and its enhancement was specific to the trained configuration of the target stimulus. The other component of the neural code was entirely related to the animal's behavioral choice; it emerged earlier in PFC than V4 and its enhancement completely generalized to an untrained stimulus configuration. These results implicate two concurrent and synergistic learning processes: a perceptual process that is specific to the details of the trained stimulus feature and a cognitive process that is dependent on the total amount of learning experience in the trained task. When combined, these two learning processes were well predictive of the animal's learning behavior.

Cytoplasmic dynein is activated by the dynactin complex, cargo adapters and LIS1 (Lissencephaly 1). How this process is regulated in vivo remains unclear. The dynein motor ring contains six AAA+ (ATPases associated with diverse cellular activities) domains. Here, we used the filamentous fungus Aspergillus nidulans to examine whether ATP hydrolysis at AAA3 regulates dynein activation in the context of other regulators. In fungal hyphae, early endosomes undergo dynein-mediated movement away from the microtubule plus ends near the hyphal tip. Dynein normally accumulates at the microtubule plus ends. The early endosomal adaptor Hook protein, together with dynactin, drives dynein activation to cause its relocation to the microtubule minus ends. This activation process depends on LIS1, but LIS1 tends to dissociate from dynein after its activation. In this study, we found that dynein containing a mutation-blocking ATP hydrolysis at AAA3 can undergo LIS1-independent activation, consistent with our genetic data that the same mutation suppresses the growth defect of the A. nidulans LIS1-deletion mutant. Our data also suggest that blocking AAA3 ATP hydrolysis allows dynein activation by dynactin without the early endosomal adaptor. As a consequence, dynein accumulates at microtubule minus ends whereas early endosomes stay near the plus ends. Dynein containing a mutation-blocking ATP binding at AAA3 largely depends on LIS1 for activation, but this mutation abnormally prevents LIS1 dissociation upon dynein activation. Together, our data suggest that the AAA3 ATPase cycle regulates the coordination between dynein activation and cargo binding as well as the dynamic dynein-LIS1 interaction.

Comment in Curr Biol. 2021 Oct 25;31(20):R1392-R1395.

Reward value is known to modulate learning speed in spatial memory tasks, but little is known about its influence on the dynamical changes in hippocampal spatial representations. Here, we monitored the trial-to-trial changes in hippocampal place cell activity during the acquisition of place-reward associations with varying reward size. We show a faster reorganization and stabilization of the hippocampal place map when a goal location is associated with a large reward. The reorganization is driven by both rate changes and the appearance and disappearance of place fields. The occurrence of hippocampal replay activity largely followed the dynamics of changes in spatial representations. Replay patterns became more selectively tuned toward behaviorally relevant experiences over the course of learning via the refined contributions of specific cell subpopulations. These results suggest that high reward value enhances memory retention by accelerating the formation and stabilization of the hippocampal cognitive map and selectively enhancing its reactivation during learning.

Comment on Curr Biol. 2021 Oct 25;31(20):4449-4461.e4.

Comment on Curr Biol. 2021 Oct 25;31(20):4596-4607.e5.

Comment on Curr Biol. 2021 Oct 25;31(20):4627-4634.e3.

Comment on Curr Biol. 2021 Oct 25;31(20):4650-4658.e6.

Comment on Curr Biol. 2021 Oct 25;31(20):4512-4520.e6.

What are the origins of musical rhythm? One approach to the biology and evolution of music consists in finding common musical traits across species. These similarities allow biomusicologists to infer when and how musical traits appeared in our species1. A parallel approach to the biology and evolution of music focuses on finding statistical universals in human music2. These include rhythmic features that appear above chance across musical cultures. One such universal is the production of categorical rhythms3, defined as those where temporal intervals between note onsets are distributed categorically rather than uniformly2,4,5. Prominent rhythm categories include those with intervals related by small integer ratios, such as 1:1 (isochrony) and 1:2, which translates as some notes being twice as long as their adjacent ones. In humans, universals are often defined in relation to the beat, a top-down cognitive process of inferring a temporal regularity from a complex musical scene1. Without assuming the presence of the beat in other animals, one can still investigate its downstream products, namely rhythmic categories with small integer ratios detected in recorded signals. Here we combine the comparative and statistical universals approaches, testing the hypothesis that rhythmic categories and small integer ratios should appear in species showing coordinated group singing3. We find that a lemur species displays, in its coordinated songs, the isochronous and 1:2 rhythm categories seen in human music, showing that such categories are not, among mammals, unique to humans3.

Interview with Cynthia Moss, who studies echolocating bats to understand the coordination of sensory and motor activity in 3D space at Johns Hopkins University.

In most vertebrates, the demand for glucose as the primary substrate for cellular respiration is met by the breakdown of complex carbohydrates, or energy is obtained by protein and lipid catabolism. In contrast, a few bat and bird species have convergently evolved to subsist on nectar, a sugar-rich mixture of glucose, fructose, and sucrose.1-4 How these nectar-feeders have adapted to cope with life-long high sugar intake while avoiding the onset of metabolic syndrome and diabetes5-7 is not understood. We analyzed gene sequences obtained from 127 taxa, including 22 nectar-feeding bat and bird genera that collectively encompass four independent origins of nectarivory. We show these divergent taxa have undergone pervasive molecular adaptation in sugar catabolism pathways, including parallel selection in key glycolytic and fructolytic enzymes. We also uncover convergent amino acid substitutions in the otherwise evolutionarily conserved aldolase B (ALDOB), which catalyzes rate-limiting steps in fructolysis and glycolysis, and the mitochondrial gatekeeper pyruvate dehydrogenase (PDH), which links glycolysis and the tricarboxylic acid cycle. Metabolomic profile and enzyme functional assays are consistent with increased respiratory flux in nectar-feeding bats and help explain how these taxa can both sustain hovering flight and efficiently clear simple sugars. Taken together, our results indicate that nectar-feeding bats and birds have undergone metabolic adaptations that have enabled them to exploit a unique energy-rich dietary niche among vertebrates.

Understanding the impacts of activity on energy balance is crucial. Increasing levels of activity may bring diminishing returns in energy expenditure because of compensatory responses in non-activity energy expenditures.1-3 This suggestion has profound implications for both the evolution of metabolism and human health. It implies that a long-term increase in activity does not directly translate into an increase in total energy expenditure (TEE) because other components of TEE may decrease in response-energy compensation. We used the largest dataset compiled on adult TEE and basal energy expenditure (BEE) (n = 1,754) of people living normal lives to find that energy compensation by a typical human averages 28% due to reduced BEE; this suggests that only 72% of the extra calories we burn from additional activity translates into extra calories burned that day. Moreover, the degree of energy compensation varied considerably between people of different body compositions. This association between compensation and adiposity could be due to among-individual differences in compensation: people who compensate more may be more likely to accumulate body fat. Alternatively, the process might occur within individuals: as we get fatter, our body might compensate more strongly for the calories burned during activity, making losing fat progressively more difficult. Determining the causality of the relationship between energy compensation and adiposity will be key to improving public health strategies regarding obesity.

Comment in Curr Biol. 2021 Oct 25;31(20):R1397-R1400.

Noncoding RNAs have emerged as mediators of transgenerational epigenetic inheritance (TEI) in a number of organisms. A robust example of such RNA-directed TEI is the inheritance of gene-silencing states following RNA interference (RNAi) in the metazoan C. elegans. During RNAi inheritance, gene silencing is transmitted by a self-perpetuating cascade of siRNA-directed poly(UG) tailing of mRNA fragments (pUGylation), followed by siRNA synthesis from poly(UG)-tailed mRNA templates (termed pUG RNA/siRNA cycling). Despite the self-perpetuating nature of pUG RNA/siRNA cycling, RNAi inheritance is finite, suggesting that systems likely exist to prevent indefinite RNAi-triggered gene silencing. Here we show that, in the absence of Piwi-interacting RNAs (piRNAs), an animal-specific class of small noncoding RNA, RNAi-based gene silencing can become essentially permanent, lasting at near 100% penetrance for more than 5 years and hundreds of generations. This perpetual gene silencing is mediated by continuous pUG RNA/siRNA cycling. Further, we find that piRNAs coordinate endogenous RNAi pathways to prevent germline-expressed genes, which are not normally subjected to TEI, from entering a state of continual and irreversible epigenetic silencing also mediated by continuous maintenance of pUG RNA/siRNA cycling. Together, our results show that one function of C. elegans piRNAs is to insulate germline-expressed genes from aberrant and runaway inactivation by the pUG RNA/siRNA epigenetic inheritance system.

A recent study shows that rare long-range connections between brain areas may considerably improve transmission of information between areas. The study suggests that information may propagate better through long-range connections when neural activity exhibits turbulent dynamics.

Comment on Curr Biol. 2021 Oct 25;31(20):4462-4472.e6.

Comment on Curr Biol. 2021 Oct 25;31(20):4534-4546.e5.

Over the past two centuries profound technological and social changes have reduced overall levels of physical activity (PA). However, just how much population-level PA levels have declined since the Industrial Revolution is unknown because methods for measuring PA, such as accelerometry and the doubly labeled water technique, were developed only within the last few decades. Here, we show that historical records of resting body temperature (TB) can serve as a 'thermometer' of population-level PA, enabling us to use the well-documented secular decline in TB in the US1 to approximate PA decline in the US since 1820. Using cross-sectional data relating TB to resting metabolic rate (RMR) and RMR to PA, we estimate that RMR has declined by ∼6% and moderate to vigorous PA by ∼27 minutes per day since 1820 in the US.

Catherine Hobaiter, John Walter Akankwasa, Geresomu Muhumuza, Moreen Uwimbabazi and Inza Koné discuss the importance of local specialists in science.

Comment in Curr Biol. 2021 Nov 8;31(21):R1432-R1434.

Comment in Curr Biol. 2021 Oct 25;31(20):R1381-R1383.

Erratum in Curr Biol. 2021 Oct 25;31(20):4675-4676.

Comment in Curr Biol. 2021 Oct 25;31(20):R1385-R1387.

What are the key topological features of connectivity critically relevant for generating the dynamics underlying efficient cortical function? A candidate feature that has recently emerged is that the connectivity of the mammalian cortex follows an exponential distance rule, which includes a small proportion of long-range high-weight anatomical exceptions to this rule. Whole-brain modeling of large-scale human neuroimaging data in 1,003 participants offers the unique opportunity to create two models, with and without long-range exceptions, and explicitly study their functional consequences. We found that rare long-range exceptions are crucial for significantly improving information processing. Furthermore, modeling in a simplified ring architecture shows that this improvement is greatly enhanced by the turbulent regime found in empirical neuroimaging data. Overall, the results provide strong empirical evidence for the immense functional benefits of long-range exceptions combined with turbulence for information processing.

Comment in Curr Biol. 2021 Oct 25;31(20):R1390-R1392.

Insects comprise over half of all described animal species. Together with the Protura (coneheads), Collembola (springtails) and Diplura (two-pronged bristletails), insects form the Hexapoda, a terrestrial arthropod lineage characterised by possessing six legs. Exponential growth of genome-scale data for the hexapods has substantially altered our understanding of the origin and evolution of insect biodiversity. Phylogenomics has provided a new framework for reconstructing insect evolutionary history, resolving their position among the arthropods and some long-standing internal controversies such as the placement of the termites, twisted-winged insects, lice and fleas. However, despite the greatly increased size of phylogenomic datasets, contentious relationships among key insect clades remain unresolved. Further advances in insect phylogeny cannot rely on increased depth and breadth of genome and taxon sequencing. Improved modelling of the substitution process is fundamental to countering tree-reconstruction artefacts, while gene content, modelling of duplications and deletions, and comparative morphology all provide complementary lines of evidence to test hypotheses emerging from the analysis of sequence data. Finally, the integration of molecular and morphological data is key to the incorporation of fossil species within insect phylogeny. The emerging integrated framework of insect evolution will help explain the origins of insect megadiversity in terms of the evolution of their body plan, species diversity and ecology. Future studies of insect phylogeny should build upon an experimental, hypothesis-driven approach where the robustness of hypotheses generated is tested against increasingly realistic evolutionary models as well as complementary sources of phylogenetic evidence.

Animals originated in the oceans and evolved there for hundreds of millions of years before adapting to terrestrial environments. Today, oceans cover more than two-thirds of Earth and generate as much primary production as land. The path from the first macrobiota to modern marine biodiversity involved parallel increases in terrestrial nutrient input, marine primary production, species' abundance, metabolic rates, ecotypic diversity and taxonomic diversity. Bottom-up theories of ecosystem cascades arrange these changes in a causal sequence. At the base of marine food webs, nutrient fluxes and atmosphere-ocean chemistry interact with phytoplankton to regulate production. First-order consumers (e.g., zooplankton) might propagate changes in quantity and quality of phytoplankton to changes in abundance and diversity of larger predators (e.g., nekton). However, many uncertainties remain about the mechanisms and effect size of bottom-up control, particularly in oceans across the entire history of animal life. Here, we review modern and fossil evidence for hypothesized bottom-up pathways, and we assess the ramifications of these processes for four key intervals in marine ecosystems: the Ediacaran-Cambrian (635-485 million years ago), the Ordovician (485-444 million years ago), the Devonian (419-359 million years ago) and the Mesozoic (252-66 million years ago). We advocate for a clear articulation of bottom-up hypotheses to better understand causal relationships and proposed effects, combined with additional ecological experiments, paleontological documentation, isotope geochemistry and geophysical reconstructions. How small-scale ecological change transitions into large-scale evolutionary change remains an outstanding question for empirical and theoretical research.

Islands have fascinated biologists since the days of Charles Darwin and Alfred Russel Wallace and before, providing the inspiration for substantial theoretical development that has advanced our understanding of global biodiversity patterns and the mechanisms that underpin them. As such, they are often termed 'natural laboratories', providing the ideal setting to study the interface between ecology, evolution and conservation. Part of this fascination no-doubt arises from islands harboring a disproportionate amount of global biodiversity given the amount of land-mass they occupy (roughly 15-20% of global terrestrial species present in just 3.5% of global land), including large numbers of endemic forms not found anywhere else. Interestingly, more than 25% of human languages, many of which are also threatened with extinction, are also to be found on islands. In this primer, we provide an overview of the field of island biogeography, splitting it into three main sections. First, we explore some of the reasons that make islands, and the species that have evolved on them, unique and scientifically rewarding study systems for ecologists and biogeographers. Second, we delve into the key island biogeography works in order to provide an introductory summary of some of the main theoretical models developed to explain species diversity patterns on islands. Unfortunately, as well as representing captivating environments to study, islands are also highly threatened systems. As such, we end with an overview of the drivers and impacts of anthropogenic environmental change on islands, providing examples of some of the extraordinary island species that humans have driven extinct.

As prehistoric cave paintings illustrate, our species has had an enduring appreciation of the variety and abundance of life on Earth. Today, however, concern is focused on the pressure humanity is placing on the natural world, and on the continued ability of ecosystems to deliver the services on which we all depend. To understand the extent of this 'biodiversity crisis' and develop strategies to ameliorate its impact, it is essential to be able to accurately measure biological diversity (a term often contracted to biodiversity) and make informed predictions about how and why this diversity varies over space and time.

Florian Maderspacher introduces the special issue on biodiversity.

Comment on Science. 2021 Jun 11;372(6547):1176-1181.

Comment on Curr Biol. 2021 Oct 11;31(19):4231-4245.e4.

Comment in Curr Biol. 2021 Oct 11;31(19):R1138-R1140.

In multicellular animals, the first major event after fertilization is the switch from maternal to zygotic control of development. During this transition, zygotic gene transcription is broadly activated in an otherwise quiescent genome in a process known as zygotic genome activation (ZGA). In fast-developing embryos, ZGA often overlaps with the slowing of initially synchronous cell divisions at the mid-blastula transition (MBT). Initial studies of the MBT led to the nuclear-to-cytoplasmic ratio model where MBT timing is regulated by the exponentially increasing amounts of some nuclear component "N" titrated against a fixed cytoplasmic component "C." However, more recent experiments have been interpreted to suggest that ZGA is independent of the N/C ratio. To determine the role of the N/C ratio in ZGA, we generated Xenopus frog embryos with ∼3-fold differences in genomic DNA (i.e., N) by using X. tropicalis sperm to fertilize X. laevis eggs with or without their maternal genome. Resulting embryos have otherwise identical X. tropicalis genome template amounts, embryo sizes, and X. laevis maternal environments. We generated transcriptomic time series across the MBT in both conditions and used X. tropicalis paternally derived mRNA to identify a high-confidence set of exclusively zygotic transcripts. Both ZGA and the increase in cell-cycle duration are delayed in embryos with ∼3-fold less DNA per cell. Thus, DNA is an important component of the N/C ratio, which is a critical regulator of zygotic genome activation in Xenopus embryos.

Comment in Curr Biol. 2021 Oct 11;31(19):R1117-R1119.

Multiple lines of evidence show that modern humans interbred with archaic Denisovans. Here, we report an account of shared demographic history between Australasians and Denisovans distinctively in Island Southeast Asia. Our analyses are based on ∼2.3 million genotypes from 118 ethnic groups of the Philippines, including 25 diverse self-identified Negrito populations, along with high-coverage genomes of Australopapuans and Ayta Magbukon Negritos. We show that Ayta Magbukon possess the highest level of Denisovan ancestry in the world-∼30%-40% greater than that of Australians and Papuans-consistent with an independent admixture event into Negritos from Denisovans. Together with the recently described Homo luzonensis, we suggest that there were multiple archaic species that inhabited the Philippines prior to the arrival of modern humans and that these archaic groups may have been genetically related. Altogether, our findings unveil a complex intertwined history of modern and archaic humans in the Asia-Pacific region, where distinct Islander Denisovan populations differentially admixed with incoming Australasians across multiple locations and at various points in time.

Human-mediated changes to natural ecosystems have consequences for both ecosystem and human health. Historically, efforts to preserve or restore 'biodiversity' can seem to be in opposition to human interests. However, the integration of biodiversity conservation and public health has gained significant traction in recent years, and new efforts to identify solutions that benefit both environmental and human health are ongoing. At the forefront of these efforts is an attempt to clarify ways in which biodiversity conservation can help reduce the risk of zoonotic spillover of pathogens from wild animals, sparking epidemics and pandemics in humans and livestock. However, our understanding of the mechanisms by which biodiversity change influences the spillover process is incomplete, limiting the application of integrated strategies aimed at achieving positive outcomes for both conservation and disease management. Here, we review the literature, considering a broad scope of biodiversity dimensions, to identify cases where zoonotic pathogen spillover is mechanistically linked to changes in biodiversity. By reframing the discussion around biodiversity and disease using mechanistic evidence - while encompassing multiple aspects of biodiversity including functional diversity, landscape diversity, phenological diversity, and interaction diversity - we work toward general principles that can guide future research and more effectively integrate the related goals of biodiversity conservation and spillover prevention. We conclude by summarizing how these principles could be used to integrate the goal of spillover prevention into ongoing biodiversity conservation initiatives.

Fungi have successfully established themselves across seemingly every possible niche, substrate, and biome. They are fundamental to biogeochemical cycling, interspecies interactions, food production, and drug bioprocessing, as well as playing less heroic roles as difficult to treat human infections and devastating plant pathogens. Despite community efforts to estimate and catalog fungal diversity, we have only named and described a minute fraction of the fungal world. The identification, characterization, and conservation of fungal diversity is paramount to preserving fungal bioresources, and to understanding and predicting ecosystem cycling and the evolution and epidemiology of fungal disease. Although species and ecosystem conservation are necessarily the foundation of preserving this diversity, there is value in expanding our definition of conservation to include the protection of biological collections, ecological metadata, genetic and genomic data, and the methods and code used for our analyses. These definitions of conservation are interdependent. For example, we need metadata on host specificity and biogeography to understand rarity and set priorities for conservation. To aid in these efforts, we need to draw expertise from diverse fields to tie traditional taxonomic knowledge to data obtained from modern -omics-based approaches, and support the advancement of diverse research perspectives. We also need new tools, including an updated framework for describing and tracking species known only from DNA, and the continued integration of functional predictions to link genetic diversity to functional and ecological diversity. Here, we review the state of fungal diversity research as shaped by recent technological advancements, and how changing viewpoints in taxonomy, -omics, and systematics can be integrated to advance mycological research and preserve fungal biodiversity.

There can be no doubt that early land plant evolution transformed the planet but, until recently, how and when this was achieved was unclear. Coincidence in the first appearance of land plant fossils and formative shifts in atmospheric oxygen and CO2 are an artefact of the paucity of earlier terrestrial rocks. Disentangling the timing of land plant bodyplan assembly and its impact on global biogeochemical cycles has been precluded by uncertainty concerning the relationships of bryophytes to one another and to the tracheophytes, as well as the timescale over which these events unfolded. New genome and transcriptome sequencing projects, combined with the application of sophisticated phylogenomic modelling methods, have yielded increasing support for the Setaphyta clade of liverworts and mosses, within monophyletic bryophytes. We consider the evolution of anatomy, genes, genomes and of development within this phylogenetic context, concluding that many vascular plant (tracheophytes) novelties were already present in a comparatively complex last common ancestor of living land plants (embryophytes). Molecular clock analyses indicate that embryophytes emerged in a mid-Cambrian to early Ordovician interval, compatible with hypotheses on their role as geoengineers, precipitating early Palaeozoic glaciations.

Protists are the dominant eukaryotes in the biosphere where they play key functional roles. While protists have been studied for over a century, it is the high-throughput sequencing of molecular markers from environmental samples - the approach of metabarcoding - that has revealed just how diverse, and abundant, these small organisms are. Metabarcoding is now routine to survey environmental diversity, so data have rapidly accumulated from a multitude of environments and at different sampling scales. This mass of data has provided unprecedented opportunities to study the taxonomic and functional diversity of protists, and how this diversity is organised in space and time. Here, we use metabarcoding as a common thread to discuss the state of knowledge in protist diversity research, from technical considerations of the approach to important insights gained on diversity patterns and the processes that might have structured this diversity. In addition to these insights, we conclude that metabarcoding is on the verge of an exciting added dimension thanks to the maturation of high-throughput long-read sequencing, so that a robust eco-evolutionary framework of protist diversity is within reach.

Marine biodiversity is the essential foundation for the structure and functioning of ocean ecosystems and for providing the full range of ecosystem services that benefit humans on local, regional, and global scales. These benefits include many visible as well as unseen functions and services such as the oxygen we breathe, the seafood we eat, the support of local livelihoods, the marine plants storing 'blue' carbon and protecting our shorelines, the medical and biochemical compounds found in marine species, the coral reefs we explore when scuba diving, and the charismatic creatures inspiring our lives. All these benefits are provided by the diversity and interplay of ocean life, from tiny plankton and bacteria to 30 metre whales and giant kelp.

Natural populations currently face a wide variety of threats including climate change, habitat loss, over-harvesting, invasive species and disease. The most recent report by the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services (IPBES) found that ecosystems have declined by approximately 50% relative to historical pristine conditions, and that approximately 25% of species are now threatened by extinction. This human-caused biodiversity crisis calls for using all available scientific tools to understand and reverse the increasing rate of extinction. While extinction is inherently a demographic process, being driven by changes in the population growth rate, the field of genetics plays an important role in the conservation of biodiversity. 'Conservation genetics' is a diverse field that applies genetic principles and methods to characterize and advance the preservation of biodiversity. Here, I first provide a short history of the development of the field and then list examples of the most important ways that genetics contributes to conservation.

The reconstruction of evolutionary relationships among species is fundamental for our understanding of biodiversity. Today, evolutionary relationships are closely related with the depiction of the tree of life, and research on the topic is underpinned by methods in molecular phylogenetics that have grown in popularity since the 1960s. These methods depend on our understanding of how nucleotide or amino acid sequences evolve through time and in different lineages. Armed with this knowledge, researchers can make inferences about the relationships and amount of genomic divergence among species.

Jérôme Sueur and colleagues introduce the acoustic components of biodiversity.

A confluence of discoveries in ecology and agriculture suggests that biodiversity can help address the sustainability problems facing modern intensive agriculture. Here we explore several questions related to this possibility. Can increases in national crop diversity help increase the stability and security of national food systems? Can practices based on greater crop biodiversity produce yields that compete with those obtained through the long-standing, high-input monoculture model? What are the appropriate levels and combinations of crops to be used? We highlight recent research that suggests it is time to begin unlocking the agricultural potential of biodiversity - from the level of crop genetic diversity to species diversity - and to do so on spatial scales from individual fields to nations. Recent research suggests that the biodiversification of agriculture may lead to greater and more stable yields, decrease land clearing, and lower the use of harmful agrochemicals.

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Developing neural circuits, including GABAergic circuits, switch receptor types. But the role of early GABA receptor expression for establishment of functional inhibitory circuits remains unclear. Tracking the development of GABAergic synapses across axon terminals of retinal bipolar cells (BCs), we uncovered a crucial role of early GABAA receptor expression for the formation and function of presynaptic inhibitory synapses. Specifically, early α3-subunit-containing GABAA (GABAAα3) receptors are a key developmental organizer. Before eye opening, GABAAα3 gives way to GABAAα1 at individual BC presynaptic inhibitory synapses. The developmental downregulation of GABAAα3 is independent of GABAAα1 expression. Importantly, lack of early GABAAα3 impairs clustering of GABAAα1 and formation of functional GABAA synapses across mature BC terminals. This impacts the sensitivity of visual responses transmitted through the circuit. Lack of early GABAAα3 also perturbs aggregation of LRRTM4, the organizing protein at GABAergic synapses of rod BC terminals, and their arrangement of output ribbon synapses.

The estimation of one's distance to a potential threat is essential for any animal's survival. Rattlesnakes inform about their presence by generating acoustic broadband rattling sounds.1 Rattlesnakes generate their acoustic signals by clashing a series of keratinous segments onto each other, which are located at the tip of their tails.1-3 Each tail shake results in a broadband sound pulse that merges into a continuous acoustic signal with fast-repeating tail shakes. This acoustic display is readily recognized by other animals4,5 and serves as an aposematic threat and warning display, likely to avoid being preyed upon.1,6 The spectral properties of the rattling sound1,3 and its dependence on the morphology and size of the rattle have been investigated for decades7-9 and carry relevant information for different receivers, including ground squirrels that encounter rattlesnakes regularly.10,11 Combining visual looming stimuli with acoustic measurements, we show that rattlesnakes increase their rattling rate (up to about 40 Hz) with decreasing distance of a potential threat, reminiscent of the acoustic signals of sensors while parking a car. Rattlesnakes then abruptly switch to a higher and less variable rate of 60-100 Hz. In a virtual reality experiment, we show that this behavior systematically affects distance judgments by humans: the abrupt switch in rattling rate generates a sudden, strong percept of decreased distance which, together with the low-frequency rattling, acts as a remarkable interspecies communication signal. VIDEO ABSTRACT.

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Although many marine ecosystems have been adversely impacted by human activities,1 some are now recovering due to reductions in fishing pressure.2-4 Here, we document the recovery of an ecosystem subjected to intense anthropogenic activity for over 200 years, the Clyde Sea.5 This region once had productive fisheries for herring (Clupea harengus) and other fish, but these disappeared at the turn of the century.6,7 Using acoustic surveys of the pelagic ecosystem, we found that the Clyde Sea supports 100 times as many forage fish as in the late 1980s. However, herring has now been replaced by sprat (Sprattus sprattus), despite virtually no fishing on herring for 20 years. A combination of a warming sea,6 bycatch of herring in the prawn (Nephrops norvegicus) fishery,8,9 and susceptibility of herring to poor recruitment may have contributed to this unexpected recovery. We compare this to similar unexpected "recoveries" involving unforeseen ecosystem effects, such as the return of hake (Merluccius merluccius) to the North Sea;10,11 the recent expansion of the pelagic squat lobster, "munida," (Pleuroncodes monodon) off Peru;12 and the increase in scallop (Placopecten magellanicus) numbers on Georges Bank.13 The lack of a current sprat fishery in the Clyde presents a unique opportunity to develop an alternative industry for its seafaring community: ecotourism. Charismatic megafauna (whales, dolphins, and seabirds) that people will pay to see14 will, in time-if not already15,16-be drawn in by the abundance of forage fish now present, further restoring the biodiversity of the region after centuries of overexploitation.

The UN Decade on Ecosystem Restoration offers immense potential to return hundreds of millions of hectares of degraded tropical landscapes to functioning ecosystems. Well-designed restoration can tackle multiple Sustainable Development Goals, driving synergistic benefits for biodiversity, ecosystem services, agricultural and timber production, and local livelihoods at large spatial scales. To deliver on this potential, restoration efforts must recognise and reduce trade-offs among objectives, and minimize competition with food production and conservation of native ecosystems. Restoration initiatives also need to confront core environmental challenges of climate change and inappropriate planting in savanna biomes, be robustly funded over the long term, and address issues of poor governance, inadequate land tenure, and socio-cultural disparities in benefits and costs. Tackling these issues using the landscape approach is vital to realising the potential for restoration to break the cycle of land degradation and poverty, and deliver on its core environmental and social promises.

The fossil record is the primary source of information on how biodiversity has varied in deep time, providing unique insight on the long-term dynamics of diversification and their drivers. However, interpretations of fossil record diversity patterns have been much debated, with a traditional focus on global diversity through time. Problems arise because the fossil record is spatially and temporally patchy, so 'global' diversity estimates actually represent the summed diversity across a set of geographically and environmentally distinct regions that vary substantially in number and identity through time. Furthermore, a focus on global diversity lumps the signal of ecological drivers at local and regional scales with the signal of global-scale processes, including variation in the distribution of environments and in provincialism (the extent of subdivision into distinct biogeographic regions). These signals cannot be untangled by studying global diversity measures alone. These conceptual and empirical concerns necessitate a shift away from the study of 'biodiversity through time' and towards the study of 'biodiversity across time and space'. Spatially explicit investigations, including analyses of local- and regional-scale datasets, are central to achieving this and allow analysis of geographic scale, location and the environmental parameters directly experienced by organisms. So far, research in this area has revealed the stability of species richness variation among environments through time, and the potential climatic and Earth-system drivers of changing biodiversity. Ultimately, this research program promises to address key questions regarding the assembly of biodiversity, and the contributions of local-, regional- and global-scale processes to the diversification of life on Earth.

Global trade of wildlife is a major driver of species decline. The trade in wildlife actually plays a much larger role in our daily lives than many people realize, and its use and legality are surprisingly complex. Wildlife trade includes the trade of any organism, including fungi, plants and animals, sourced from the wild. This comprises thousands of wild species, including over 7600, or nearly one quarter, of terrestrial vertebrate species. Trade in wildlife is worth billions annually via commercial fishing at $180 billion, timber at $227 billion and fashion at $2.5 billion - in addition to largely unquantified trade for meat, medicine, ornamental use and pets. Wildlife trade, such as that of ivory, is the subject of intense public debate, international regulation and criminal prosecution, while trade of other species is more often overlooked. How wildlife trade is regulated and what is legal and illegal varies both between and within taxonomic groups and depends on where and how trade occurs. Wildlife trade across most sectors has increased since monitoring began, for example, between 1996 and 2018 the global fish market rose from $40 billion to $180 billion, wood from $65 billion to $137 billion and reptile leather for fashion trade from $140 million to $600 million. In concert, the annual number of trades legally traded through CITES has also grown, from under 5000 transactions in 1977 to peaking at over 1.3 million in 2015, with shipment size increasing in parallel and seizures of illegally traded species showing similar trends. Balancing the needs of people for livelihood generation, especially with access and benefit-sharing rights, with the impact on species survival remains difficult. Issues like the role of trophy and sports hunting within conservation remain a topic of debate in the conservation community. Finding approaches that enable long-term species survival, are equitable and do not undermine livelihoods is a constant challenge.

Biodiversity is changing at alarming rates as a result of human activities; yet biodiversity is the basis for ecosystem services upon which humans depend. Most of what we know about past, current, and projected biodiversity trends, as well as the ecosystem consequences of biodiversity change, is based on charismatic species, mostly plants and vertebrates. But 31 out of 32 animal phyla are invertebrates, representing roughly 75% of all described species on Earth. Evolution has not only produced an astonishing taxonomic diversity of invertebrates, but also an unparalleled morphological and functional diversity that has allowed invertebrates to populate marine, terrestrial, and freshwater realms. Invertebrates are responsible for many ecosystem services and disservices, which makes their appreciation and conservation a top priority of future research and policy.

In between Earth's poles, ants exert impacts on other biota that are unmatched by most animal clades. Through their interactions with animals, plants, fungi and microbes, ants have cultivated - or succumbed to - relationships ranging from metabolic mutualisms to exploitation by social parasites. The diversity of these relationships implies that ants are keystone taxa in many habitats, directly or indirectly supporting a menagerie of other species. Yet, beyond these interactions is a less obvious but arguably as significant impact: through their collective ecological pressure, ants have imposed survivorship bias on the species that we observe inhabiting terrestrial environments. If life on land has passed through an ant-shaped selective filter, it is imperative we understand how these insects have sculpted ecological communities and are enmeshed within them. Here, we describe how ants have shaped biodiversity, and the often-devastating consequences of humanity's impact on these social insects.

Grasslands comprise one of Earth's dominant biomes, accounting for up to 40% of its terrestrial area (Figure 1). The fundamental components of grassland habitats are grasses and grass-like plants, but diverse assemblages of other plant life forms and diverse animal communities also contribute to grassland biodiversity. Grasses have evolved traits allowing them to cope with climatic extremes, specific soil conditions, fires, and herbivory, all of which sustain grasslands by limiting the establishment, survival, growth, and dominance of woody vegetation. Grasslands occur in almost all climatic zones, except the poles, extreme arid zones, and the highest mountains (Figure 1). Temperate grassland habitats include Eurasian steppes, North American prairies, the pampas lowlands of South America, and Patagonian steppe. Tropical and subtropical grasslands (savannas) occur mostly in Africa and Australia, but are also found in the north of South America, in the southern United States, South Asia, and Southeast Asia.

The science underpinning biodiversity's importance to human well-being seems to be taken up little by environmental decision makers. Since the 1950s, ecological, evolutionary and environmental research has pointed to the importance of biodiversity as a significant factor influencing the stability and functioning of population, community, eco- and Earth-systems and the environmental services they provide. Despite its prominence and the tremendous contributions to our understanding of the natural world, this field of research, which we term 'bio-functional ecology', seems not to have had the impact it should. Biotic impoverishment, the loss of biodiversity across all scales and across all taxa, continues to worsen. We suggest that redirecting ecology's emphasis on ecological stability to a focus on environmental risk could help bring bio-functional ecology research more into the environmental arena. Rather than managing biodiversity as an agent of ecological stability, biodiversity could be managed as a natural capital asset in a portfolio of social, human, produced and financial capital assets. This would allow using portfolio theory to identify options for minimizing environmental risk while ensuring human well-being. In this essay, we argue that environmental risk more accurately captures people's motivation to preserve and manage biodiversity than does ecological stability. This redirection from stability to risk may provide greater clarity for decision makers and people in general as to why biodiversity is fundamentally linked to human well-being. In doing so, we can help curb the currently unabated spread of biotic impoverishment across the biosphere.

The U.N. has declared 2021-2030 the 'decade of restoration' (https://www.decadeonrestoration.org). This initiative aspires to many actions, but its agenda must include 'reconnecting nature'. Even when natural habitats remain, they often come in fragments too small or isolated to sustain viable populations. Human activities surround habitats with unsuitable areas or constrict animals' movements with artificial barriers, such as roads or fences. The harm this fragmentation causes is evident. Here, we discuss various actions to mitigate its problems, seeking explicit evidence of their efficacy. These actions range from small-scale, controlled experiments to continent-wide programmes to allow species the freedom to roam. Even simple connections, such as highway overpasses or tunnels, usually allow movement such that the genetic and demographic problems that beset small, isolated populations may be diminished. Showing that species move when we give them the chance to do so may be a sufficient measure of success, even if we do not always understand the consequences in detail.

Various macro-evolutionary phenomena, such as long-term stability punctuated by bursts of evolution, are difficult to explain via the micro-evolutionary process of weak selection acting steadily on individual mutations. In contrast, bursts of change are expected if evolutionary systems are complex and balanced, with occasional disruption of balance. Such disruption represents the collapse of resilience, akin to the snapping of an elastic band. It can be driven by external factors, or by self-propagating feedback loops internal to a system. Thus, evolutionary resilience could help explain how evolution generates broader patterns of biodiversity. We outline evidence and tests for this hypothesis, which emphasizes the processes balancing evolution, as urged fifty years ago in ecological genetics and via modern results in a range of systems.

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Imitation is one of the core building blocks of human social cognition, supporting capacities as diverse as empathy, social learning, and knowledge acquisition1. Newborns' ability to match others' motor acts, while quite limited initially, drastically improves during the first months of development2. Of notable importance to human sociality is our tendency to rapidly mimic facial expressions of emotion. Facial mimicry develops around six months of age3, but because of its late emergence, the factors supporting its development are relatively unknown. One possibility is that the development of facial mimicry depends on seeing emotional imitative behavior in others4. Alternatively, the drive to imitate facial expressions of emotion may be independent of visual learning and be supported by modality-general processes. Here we report evidence for the latter, by showing that congenitally blind participants facially imitate smiles heard in speech, despite having never seen a facial expression.

Interview with Edmund Brodie, who studies how interactions among genes, individuals, and species drive evolutionary change at the Mountain Lake Biological Station, University of Virginia.

Ornamentation is typically observed in sexually mature adults, is often dimorphic in expression, and is most apparent during breeding, supporting a role for sexual selection in its evolution.1-4 Yet, increasing evidence suggests that nonsexual social selection may also have a role in the evolution of ornamentation, especially in females.5-9 Distinguishing between these alternatives remains challenging because sexual and nonsexual factors may both play important and overlapping roles in trait evolution.7,10 Here, we show that female ornamentation in a dichromatic hummingbird, the white-necked jacobin (Florisuga mellivora), cannot be explained by sexual selection. Although all males are ornamented, nearly 30% of females have male-like plumage. Remarkably, all juveniles of both sexes express ornamented plumage similar to adult males (androchromatism), but 80% of females acquire non-ornamented plumage (heterochromatism) as they age. This unique ontogeny excludes competition for mates as an explanation for female ornamentation because non-reproductive juveniles are more likely to be ornamented than adults. Instead, avoidance of social harassment appears to underlie this female-limited polymorphism, as heterochrome taxidermy mounts received more aggressive and sexual attention than androchrome mounts from this and other hummingbird species. Monitoring electronically tagged birds at data-logging feeders showed that androchrome females accessed feeders more than heterochrome females, presumably because of reduced harassment. Our findings demonstrate that ornamentation can arise purely through nonsexual social selection, and this hypothesis must be considered in the evolution of not only female-limited polymorphism but also the spectacular ornamentation often assumed to result from sexual selection.

In non-human primates, a subset of frontoparietal neurons (mirror neurons) respond both when an individual executes an action and when it observes another individual performing a similar action.1-8 Mirror neurons constitute an observation and execution matching system likely involved in others' actions processing3,5,9 and in a large set of complex cognitive functions.10,11 Here, we show that the forelimb motor cortex of rats contains neurons presenting mirror properties analogous to those observed in macaques. We provide this evidence by event-related potentials acquired by microelectrocorticography and intracortical single-neuron activity, recorded from the same cortical region during grasping execution and observation. Mirror responses are highly specific, because grasping-related neurons do not respond to the observation of either grooming actions or graspable food alone. These results demonstrate that mirror neurons are present already in species phylogenetically distant from primates, suggesting for them a fundamental, albeit basic, role not necessarily related to higher cognitive functions. Moreover, because murine models have long been valued for their superior experimental accessibility and rapid life cycle, the present finding opens an avenue to new empirical studies tackling questions such as the innate or acquired origin of sensorimotor representations and the effects of social and environmental deprivation on sensorimotor development and recovery.

Comment in Curr Biol. 2021 Oct 11;31(19):R1132-R1135.

Depth perception emerges from the development of binocular neurons in primary visual cortex. Vision is required for these neurons to acquire their mature responses to visual stimuli. The prevailing view is that vision does not influence binocular circuitry until the onset of the critical period, about a week after eye opening, and that plasticity of visual responses is triggered by increased inhibition. Here, we show that vision is required to form binocular neurons and to improve binocular tuning and matching from eye opening until critical period closure. Enhancing inhibition does not accelerate this process. Vision soon after eye opening improves the tuning properties of binocular neurons by strengthening and sharpening ipsilateral eye cortical responses. This progressively changes the population of neurons in the binocular pool, and this plasticity is sensitive to interocular differences prior to critical period onset. Thus, vision establishes binocular circuitry and guides binocular plasticity from eye opening.

The ancestor of termites relied on gut symbionts for degradation of plant material, an association that persists in all termite families.1,2 However, the single-lineage Macrotermitinae has additionally acquired a fungal symbiont that complements digestion of food outside the termite gut.3 Phylogenetic analysis has shown that fungi grown by these termites form a clade-the genus Termitomyces-but the events leading toward domestication remain unclear.4 To address this, we reconstructed the lifestyle of the common ancestor of Termitomyces using a combination of ecological data with a phylogenomic analysis of 21 related non-domesticated species and 25 species of Termitomyces. We show that the closely related genera Blastosporella and Arthromyces also contain insect-associated species. Furthermore, the genus Arthromyces produces asexual spores on the mycelium, which may facilitate insect dispersal when growing on aggregated subterranean fecal pellets of a plant-feeding insect. The sister-group relationship between Arthromyces and Termitomyces implies that insect association and asexual sporulation, present in both genera, preceded the domestication of Termitomyces and did not follow domestication as has been proposed previously. Specialization of the common ancestor of these two genera on an insect-fecal substrate is further supported by similar carbohydrate-degrading profiles between Arthromyces and Termitomyces. We describe a set of traits that may have predisposed the ancestor of Termitomyces toward domestication, with each trait found scattered in related taxa outside of the termite-domesticated clade. This pattern indicates that the origin of the termite-fungus symbiosis may not have required large-scale changes of the fungal partner.

Comment in Curr Biol. 2021 Oct 11;31(19):R1115-R1117.

More than 20 years ago, the sequencing of the genome of the nematode Caenorhabditis elegans uncovered a still unparalleled abundance of C4-zinc finger orphan nuclear hormone receptors, encoded by 267 different nhr genes.1,2 Only less than 20 of them are conserved throughout the animal kingdom; all the remaining genes are the results of an expansion of the HNF4-subtype of nuclear receptors.3,4 Strikingly, even though most of the receptors contain predicted ligand binding domains, no ligand has since been identified for any of the non-conserved, C. elegans-expanded nhr genes. Based on an analysis of more than 100 nematode genome sequences, as well as the mining of recently established nervous system-wide gene expression patterns, we propose here that nhr family expansion is a manifestation of adaptation of free-living nematodes to complex sensory environments and that NHR proteins may function as sensory receptors for external or internal sensory cues to modulate the animal's sensory responses to environmental cues as well as its internal metabolic state.

Predictions of future biological invasions often rely on the assumption that introduced species establish only under climatic conditions similar to those in their native range. To date, 135 studies have tested this assumption of 'niche conservatism', yielding contradictory results. Here we revisit this literature, consider the evidence for niche shifts, critically assess the methods used, and discuss the authors' interpretations of niche shifts. We find that the true frequency of niche shifts remains unknown because of diverging interpretations of similar metrics, conceptual issues biasing conclusions towards niche conservatism, and the use of climatic data that may not be biologically meaningful. We argue that these issues could be largely addressed by focussing on trends or relative degrees of niche change instead of dichotomous classifications (shift versus no shift), consistently and transparently including non-analogous climates, and conducting experimental studies on mismatches between macroclimates and microclimates experienced by the study organism. Furthermore, an observed niche shift may result either from species filling a greater part of their fundamental niche during the invasion (a 'realised niche shift') or from rapid evolution of traits adapting species to novel climates in the introduced range (a 'fundamental niche shift'). Currently, there is no conclusive evidence distinguishing between these potential mechanisms of niche shifts. We outline how these questions may be addressed by combining computational analyses and experimental evidence.

In his famous (if uncharacteristic) burst of lyricism at the end of the Origin Darwin described biodiversity as "endless forms most beautiful and wonderful". It is easy to agree with him when one considers red-lipped batfish or pelagic holothurians. But are they endless, or are there limitations to the variety of forms - and if there are, where do they come from? Can morphological evolution be described by Brownian motion of a gas, slowly diffusing to fill up all the space of possible forms, or does it operate within a certain set of constraints? And if there are constraints, where do they come from? The concept of morphospace is an attempt to map out the products of evolution within a quantitative framework to try to shed light on these questions.

James Watson and Oscar Venter introduce the concept of wilderness and its role in conservation efforts.

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Centrioles are structurally conserved organelles, composing both centrosomes and cilia. In animal cycling cells, centrioles often form through a highly characterized process termed canonical duplication. However, a large diversity of eukaryotes assemble centrioles de novo through uncharacterized pathways. This unexplored diversity is key to understanding centriole assembly mechanisms and how they evolved to assist specific cellular functions. Here, we show that, during spermatogenesis of the bryophyte Physcomitrium patens, centrioles are born as a co-axially oriented centriole pair united by a cartwheel. Interestingly, we observe that these centrioles are twisted in opposite orientations. Microtubules emanate from the bicentrioles, which localize to the spindle poles during cell division. After their separation, the two resulting sister centrioles mature asymmetrically, elongating specific microtubule triplets and a naked cartwheel. Subsequently, two motile cilia are assembled that appear to alternate between different motility patterns. We further show that centriolar components SAS6, Bld10, and POC1, which are conserved across eukaryotes, are expressed during spermatogenesis and required for this de novo biogenesis pathway. Our work supports a scenario where centriole biogenesis, while driven by conserved molecular modules, is more diverse than previously thought.

An old and controversial question in biology is whether information perceived by the nervous system of an animal can "cross the Weismann barrier" to alter the phenotypes and fitness of their progeny. Here, we show that such intergenerational transmission of sensory information occurs in the model organism, C. elegans, with a major effect on fitness. Specifically, that perception of social pheromones by chemosensory neurons controls the post-embryonic timing of the development of one tissue, the germline, relative to others in the progeny of an animal. Neuronal perception of the social environment thus intergenerationally controls the generation time of this animal.

Comment in Curr Biol. 2021 Oct 11;31(19):R1125-R1127.

The Drosophila circadian clock is driven by a transcriptional feedback loop in which CLOCK-CYCLE (CLK-CYC) binds E-boxes to transcribe genes encoding the PERIOD-TIMELESS (PER-TIM) repressor, which releases CLK-CYC from E-boxes to inhibit transcription. CLOCKWORK ORANGE (CWO) reinforces PER-TIM repression by binding E-boxes to maintain PER-TIM bound CLK-CYC off DNA, but also promotes CLK-CYC transcription through an unknown mechanism. To determine how CWO activates CLK-CYC transcription, we identified CWO target genes that are upregulated in the absence of CWO repression, conserved in mammals, and preferentially expressed in brain pacemaker neurons. Among the genes identified was a putative ortholog of mouse Clock Interacting Protein Circadian (Cipc), which represses CLOCK-BMAL1 transcription. Reducing or eliminating Drosophila Cipc expression shortens period, while overexpressing Cipc lengthens period, which is consistent with previous work showing that Drosophila Cipc represses CLK-CYC transcription in S2 cells. Cipc represses CLK-CYC transcription in vivo, but not uniformly, as per is strongly repressed, tim less so, and vri hardly at all. Long period rhythms in cwo mutant flies are largely rescued when Cipc expression is reduced or eliminated, indicating that increased Cipc expression mediates the period lengthening of cwo mutants. Consistent with this behavioral rescue, eliminating Cipc rescues the decreased CLK-CYC transcription in cwo mutant flies, where per is strongly rescued, tim is moderately rescued, and vri shows little rescue. These results suggest a mechanism for CWO-dependent CLK-CYC activation: CWO inhibition of CIPC repression promotes CLK-CYC transcription. This mechanism may be conserved since cwo and Cipc perform analogous roles in the mammalian circadian clock.

Reconstructing the tempo at which biodiversity arose is a fundamental goal of evolutionary biologists, yet the relative merits of evolutionary-rate estimates are debated based on whether they are derived from the fossil record or time-calibrated phylogenies (timetrees) of living species. Extinct lineages unsampled in timetrees are known to "pull" speciation rates downward, but the temporal scale at which this bias matters is unclear. To investigate this problem, we compare mammalian diversification-rate signatures in a credible set of molecular timetrees (n = 5,911 species, ∼70% from DNA) to those in fossil genus durations (n = 5,320). We use fossil extinction rates to correct or "push" the timetree-based (pulled) speciation-rate estimates, finding a surge of speciation during the Paleocene (∼66-56 million years ago, Ma) between the Cretaceous-Paleogene (K-Pg) boundary and the Paleocene-Eocene Thermal Maximum (PETM). However, about two-thirds of the K-Pg-to-PETM originating taxa did not leave modern descendants, indicating that this rate signature is likely undetectable from extant lineages alone. For groups without substantial fossil records, thankfully all is not lost. Pushed and pulled speciation rates converge starting ∼10 Ma and are equal at the present day when recent evolutionary processes can be estimated without bias using species-specific "tip" rates of speciation. Clade-wide moments of tip rates also enable enriched inference, as the skewness of tip rates is shown to approximate a clade's extent of past diversification-rate shifts. Molecular timetrees need fossil-correction to address deep-time questions, but they are sufficient for shallower time questions where extinctions are fewer.

Comment in Curr Biol. 2021 Oct 11;31(19):R1120-R1122.