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1. Low RNA stability signifies increased post-transcriptional regulation of cell identity genes.
Nucleic Acids Res
2023 Jul 7
Li Y, Yi Y, Lv J
2. Epigenetic plasticity safeguards heterochromatin configuration in mammals.
Nucleic Acids Res
2023 Jul 7
Fukuda K, Shimi T, Shimura C
3. Extraordinary long-stem confers resistance of intrinsic terminators to processive antitermination.
Nucleic Acids Res
2023 Jul 7
Miguel-Arribas A, Martín-María A, Alaerds ECW
4. A potential histone-chaperone activity for the MIER1 histone deacetylase complex.
Nucleic Acids Res
2023 Jul 7
Wang S, Fairall L, Pham TK
5. Redefining normal breast cell populations using long noncoding RNAs.
Nucleic Acids Res
2023 Jul 7
Bitar M, Rivera IS, Almeida I
6. Abasic site-peptide cross-links are blocking lesions repaired by AP endonucleases.
Nucleic Acids Res
2023 Jul 7
Yudkina AV, Bulgakov NA, Kim DV
7. Hi-TrAC detects active sub-TADs and reveals internal organizations of super-enhancers.
Nucleic Acids Res
2023 Jul 7
Cao Y, Liu S, Cui K
8. Prediction of cooperative homeodomain DNA binding sites from high-throughput-SELEX data.
Nucleic Acids Res
2023 Jul 7
Cain B, Webb J, Yuan Z
9. A generalizable framework to comprehensively predict epigenome, chromatin organization, and transcriptome.
Nucleic Acids Res
2023 Jul 7
Zhang Z, Feng F, Qiu Y
10. Forkhead box protein D2 suppresses colorectal cancer by reprogramming enhancer interactions.
Nucleic Acids Res
2023 Jul 7
Kim HM, Kang B, Park S
11. A network of DZF proteins controls alternative splicing regulation and fidelity.
Nucleic Acids Res
2023 Jul 7
Haque N, Will A, Cook AG
12. DksA is a conserved master regulator of stress response in Acinetobacter baumannii.
Nucleic Acids Res
2023 Jul 7
Maharjan RP, Sullivan GJ, Adams FG
13. Crol contributes to PRE-mediated repression and Polycomb group proteins recruitment in Drosophila.
Nucleic Acids Res
2023 Jul 7
Erokhin M, Brown JL, Lomaev D
14. Depositing centromere repeats induces heritable intragenic heterochromatin establishment and spreading in Arabidopsis.
Nucleic Acids Res
2023 Jul 7
Liu ZW, Liu J, Liu F
15. DNA strand asymmetry generated by CpG hemimethylation has opposing effects on CTCF binding.
Nucleic Acids Res
2023 Jul 7
Thomas SL, Xu TH, Carpenter BL
16. Progesterone receptor mediates ovulatory transcription through RUNX transcription factor interactions and chromatin remodelling.
Nucleic Acids Res
2023 Jul 7
Dinh DT, Breen J, Nicol B
17. Nucleotide excision repair in Human cell lines lacking both XPC and CSB proteins.
Nucleic Acids Res
2023 Jul 7
Lindsey-Boltz LA, Yang Y, Kose C
18. Miniature RNAs are embedded in an exceptionally protein-rich mitoribosome via an elaborate assembly pathway.
Nucleic Acids Res
2023 Jul 7
Valach M, Benz C, Aguilar LC
19. Replisome dysfunction upon inducible TIMELESS degradation synergizes with ATR inhibition to trigger replication catastrophe.
Nucleic Acids Res
2023 Jul 7
Patel JA, Zezelic C, Rageul J
20. Sequential disruption of SPLASH-identified vRNA-vRNA interactions challenges their role in influenza A virus genome packaging.
Nucleic Acids Res
2023 Jul 7
Jakob C, Lovate GL, Desirò D
21. Diverse targets of SMN2-directed splicing-modulating small molecule therapeutics for spinal muscular atrophy.
Nucleic Acids Res
2023 Jul 7
Ottesen EW, Singh NN, Luo D
22. Attenuation of a DNA cruciform by a conserved regulator directs T3SS1 mediated virulence in Vibrio parahaemolyticus.
Nucleic Acids Res
2023 Jul 7
Getz LJ, Brown JM, Sobot L
23. Pyruvate Kinase M (PKM) binds ribosomes in a poly-ADP ribosylation dependent manner to induce translational stalling.
Nucleic Acids Res
2023 Jul 7
Kejiou NS, Ilan L, Aigner S
24. Crucial role of iron in epigenetic rewriting during adipocyte differentiation mediated by JMJD1A and TET2 activity.
Nucleic Acids Res
2023 Jul 7
Suzuki T, Komatsu T, Shibata H
25. Translational fidelity screens in mammalian cells reveal eIF3 and eIF4G2 as regulators of start codon selectivity.
Nucleic Acids Res
2023 Jul 7
She R, Luo J, Weissman JS.
26. The ribosome quality control factor Asc1 determines the fate of HSP70 mRNA on and off the ribosome.
Nucleic Acids Res
2023 Jul 7
Alagar Boopathy LR, Beadle E, Xiao AR
27. Fendrr synergizes with Wnt signalling to regulate fibrosis related genes during lung development via its RNA:dsDNA triplex element.
Nucleic Acids Res
2023 Jul 7
Ali T, Rogala S, Krause NM
28. Knockout of protein phosphatase 1 in Leishmania major reveals its role during RNA polymerase II transcription termination.
Nucleic Acids Res
2023 Jul 7
Kieft R, Zhang Y, Yan H
29. Conformational dynamics of the RNA binding channel regulates loading and translocation of the DEAH-box helicase Prp43.
Nucleic Acids Res
2023 Jul 7
Enders M, Ficner R, Adio S.
30. Single-stranded DNA recruitment mechanism in replication origin unwinding by DnaA initiator protein and HU, an evolutionary ubiquitous nucleoid protein.
Nucleic Acids Res
2023 Jul 7
Yoshida R, Ozaki S, Kawakami H
31. A new G-quadruplex-specific photosensitizer inducing genome instability in cancer cells by triggering oxidative DNA damage and impeding replication fork progression.
Nucleic Acids Res
2023 Jul 7
Deiana M, Andrés Castán JM, Josse P
32. Whole-cell modeling of E. coli confirms that in vitro tRNA aminoacylation measurements are insufficient to support cell growth and predicts a positive feedback mechanism regulating arginine biosynthesis.
Nucleic Acids Res
2023 Jul 7
Choi H, Covert MW.
33. A conserved motif in the disordered linker of human MLH1 is vital for DNA mismatch repair and its function is diminished by a cancer family mutation.
Nucleic Acids Res
2023 Jul 7
Wolf K, Kosinski J, Gibson TJ
34. Epigenetic CpG duplex marks probed by an evolved DNA reader via a well-tempered conformational plasticity.
Nucleic Acids Res
2023 Jul 7
Singh H, Das CK, Buchmuller BC
35. GenomeFLTR: filtering reads made easy.
Nucleic Acids Res
2023 Jul 5
Dotan E, Alburquerque M, Wygoda E
36. WebQUAST: online evaluation of genome assemblies.
Nucleic Acids Res
2023 Jul 5
Mikheenko A, Saveliev V, Hirsch P
37. SMDB: a Spatial Multimodal Data Browser.
Nucleic Acids Res
2023 Jul 5
Cao R, Ling Y, Meng J
38. DeepNeo: a webserver for predicting immunogenic neoantigens.
Nucleic Acids Res
2023 Jul 5
Kim JY, Bang H, Noh SJ
39. MpoxRadar: a worldwide MPXV genomic surveillance dashboard.
Nucleic Acids Res
2023 Jul 5
Nasri F, Kongkitimanon K, Wittig A
40. AlloReverse: multiscale understanding among hierarchical allosteric regulations.
Nucleic Acids Res
2023 Jul 5
Zha J, Li Q, Liu X
41. ChemMaps.com v2.0: exploring the environmental chemical universe.
Nucleic Acids Res
2023 Jul 5
Borrel A, Conway M, Nolte SZ
42. Enrichr-KG: bridging enrichment analysis across multiple libraries.
Nucleic Acids Res
2023 Jul 5
Evangelista JE, Xie Z, Marino GB
43. RNAcanvas: interactive drawing and exploration of nucleic acid structures.
Nucleic Acids Res
2023 Jul 5
Johnson PZ, Simon AE.
44. PHASTEST: faster than PHASTER, better than PHAST.
Nucleic Acids Res
2023 Jul 5
Wishart DS, Han S, Saha S
45. dbCAN3: automated carbohydrate-active enzyme and substrate annotation.
Nucleic Acids Res
2023 Jul 5
Zheng J, Ge Q, Yan Y
46. SH2db, an information system for the SH2 domain.
Nucleic Acids Res
2023 Jul 5
Bajusz D, Pándy-Szekeres G, Takács Á
47. NBBC: a non-B DNA burden explorer in cancer.
Nucleic Acids Res
2023 Jul 5
Xu Q, Kowalski J.
48. Proksee: in-depth characterization and visualization of bacterial genomes.
Nucleic Acids Res
2023 Jul 5
Grant JR, Enns E, Marinier E
49. Updated MS²PIP web server supports cutting-edge proteomics applications.
Nucleic Acids Res
2023 Jul 5
Declercq A, Bouwmeester R, Chiva C
50. IRSOM2: a web server for predicting bifunctional RNAs.
Nucleic Acids Res
2023 Jul 5
Postic G, Tav C, Platon L
51. The LightDock Server: Artificial Intelligence-powered modeling of macromolecular interactions.
Nucleic Acids Res
2023 Jul 5
Jiménez-García B, Roel-Touris J, Barradas-Bautista D.
52. TransCRISPR-sgRNA design tool for CRISPR/Cas9 experiments targeting specific sequence motifs.
Nucleic Acids Res
2023 Jul 5
Woźniak T, Sura W, Kazimierska M
53. PrismNet: predicting protein-RNA interaction using in vivo RNA structural information.
Nucleic Acids Res
2023 Jul 5
Xu Y, Zhu J, Huang W
54. OpenXGR: a web-server update for genomic summary data interpretation.
Nucleic Acids Res
2023 Jul 5
Bao C, Wang S, Jiang L
55. PanDrugs2: prioritizing cancer therapies using integrated individual multi-omics data.
Nucleic Acids Res
2023 Jul 5
Jiménez-Santos MJ, Nogueira-Rodríguez A, Piñeiro-Yáñez E
56. DIANA-microT 2023: including predicted targets of virally encoded miRNAs.
Nucleic Acids Res
2023 Jul 5
Tastsoglou S, Alexiou A, Karagkouni D
57. ARMADiLLO: a web server for analyzing antibody mutation probabilities.
Nucleic Acids Res
2023 Jul 5
Martin Beem JS, Venkatayogi S, Haynes BF
58. PASSer: fast and accurate prediction of protein allosteric sites.
Nucleic Acids Res
2023 Jul 5
Tian H, Xiao S, Jiang X
59. The AnnotSV webserver in 2023: updated visualization and ranking.
Nucleic Acids Res
2023 Jul 5
Geoffroy V, Lamouche JB, Guignard T
60. OnTarget: in silico design of MiniPromoters for targeted delivery of expression.
Nucleic Acids Res
2023 Jul 5
Fornes O, Av-Shalom TV, Korecki AJ
61. sfkit: a web-based toolkit for secure and federated genomic analysis.
Nucleic Acids Res
2023 Jul 5
Mendelsohn S, Froelicher D, Loginov D
62. RNAincoder: a deep learning-based encoder for RNA and RNA-associated interaction.
Nucleic Acids Res
2023 Jul 5
Wang Y, Chen Z, Pan Z
63. DeepAlloDriver: a deep learning-based strategy to predict cancer driver mutations.
Nucleic Acids Res
2023 Jul 5
Song Q, Li M, Li Q
64. αCharges: partial atomic charges for AlphaFold structures in high quality.
Nucleic Acids Res
2023 Jul 5
Schindler O, Berka K, Cantara A
65. KVFinder-web: a web-based application for detecting and characterizing biomolecular cavities.
Nucleic Acids Res
2023 Jul 5
Guerra JVS, Ribeiro-Filho HV, Pereira JGC
66. Haplogrep 3 - an interactive haplogroup classification and analysis platform.
Nucleic Acids Res
2023 Jul 5
Schönherr S, Weissensteiner H, Kronenberg F
67. DEPICTER2: a comprehensive webserver for intrinsic disorder and disorder function prediction.
Nucleic Acids Res
2023 Jul 5
Basu S, Gsponer J, Kurgan L.
68. WebTetrado: a webserver to explore quadruplexes in nucleic acid 3D structures.
Nucleic Acids Res
2023 Jul 5
Adamczyk B, Zurkowski M, Szachniuk M
69. OrthoVenn3: an integrated platform for exploring and visualizing orthologous data across genomes.
Nucleic Acids Res
2023 Jul 5
Sun J, Lu F, Luo Y
70. PEP-FOLD4: a pH-dependent force field for peptide structure prediction in aqueous solution.
Nucleic Acids Res
2023 Jul 5
Rey J, Murail S, de Vries S
71. CAVE: a cloud-based platform for analysis and visualization of metabolic pathways.
Nucleic Acids Res
2023 Jul 5
Mao Z, Yuan Q, Li H
72. MBROLE3: improved functional enrichment of chemical compounds for metabolomics data analysis.
Nucleic Acids Res
2023 Jul 5
Lopez-Ibañez J, Pazos F, Chagoyen M.
73. PhD-SNPg: updating a webserver and lightweight tool for scoring nucleotide variants.
Nucleic Acids Res
2023 Jul 5
Capriotti E, Fariselli P.
74. DDMut: predicting effects of mutations on protein stability using deep learning.
Nucleic Acids Res
2023 Jul 5
Zhou Y, Pan Q, Pires DEV
75. TCRmodel2: high-resolution modeling of T cell receptor recognition using deep learning.
Nucleic Acids Res
2023 Jul 5
Yin R, Ribeiro-Filho HV, Lin V
76. miEAA 2023: updates, new functional microRNA sets and improved enrichment visualizations.
Nucleic Acids Res
2023 Jul 5
Aparicio-Puerta E, Hirsch P, Schmartz GP
77. SEPPA-mAb: spatial epitope prediction of protein antigens for mAbs.
Nucleic Acids Res
2023 Jul 5
Qiu T, Zhang L, Chen Z
78. NORMSEQ: a tool for evaluation, selection and visualization of RNA-Seq normalization methods.
Nucleic Acids Res
2023 Jul 5
Scheepbouwer C, Hackenberg M, van Eijndhoven MAJ
79. FLUXestimator: a webserver for predicting metabolic flux and variations using transcriptomics data.
Nucleic Acids Res
2023 Jul 5
Zhang Z, Zhu H, Dang P
80. Genome Context Viewer (GCV) version 2: enhanced visual exploration of multiple annotated genomes.
Nucleic Acids Res
2023 Jul 5
Cleary AM, Farmer AD.
81. vissE.cloud: a webserver to visualise higher order molecular phenotypes from enrichment analysis.
Nucleic Acids Res
2023 Jul 5
Mohamed A, Bhuva DD, Lee S
82. DIANA-miRPath v4.0: expanding target-based miRNA functional analysis in cell-type and tissue contexts.
Nucleic Acids Res
2023 Jul 5
Tastsoglou S, Skoufos G, Miliotis M
83. GePI: large-scale text mining, customized retrieval and flexible filtering of gene/protein interactions.
Nucleic Acids Res
2023 Jul 5
Faessler E, Hahn U, Schäuble S.
84. ResFinderFG v2.0: a database of antibiotic resistance genes obtained by functional metagenomics.
Nucleic Acids Res
2023 Jul 5
Gschwind R, Ugarcina Perovic S, Weiss M
85. MyGeneset.info: an interactive and programmatic platform for community-curated and user-created collections of genes.
Nucleic Acids Res
2023 Jul 5
Avila R, Rubinetti V, Zhou X
86. MULocDeep web service for protein localization prediction and visualization at subcellular and suborganellar levels.
Nucleic Acids Res
2023 Jul 5
Jiang Y, Jiang L, Akhil CS
87. antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation.
Nucleic Acids Res
2023 Jul 5
Blin K, Shaw S, Augustijn HE
88. SEanalysis 2.0: a comprehensive super-enhancer regulatory network analysis tool for human and mouse.
Nucleic Acids Res
2023 Jul 5
Qian FC, Zhou LW, Li YY
89. Pest Alert Tool-a web-based application for flagging species of concern in metabarcoding datasets.
Nucleic Acids Res
2023 Jul 5
Zaiko A, Scheel M, Schattschneider J
90. GPS 6.0: an updated server for prediction of kinase-specific phosphorylation sites in proteins.
Nucleic Acids Res
2023 Jul 5
Chen M, Zhang W, Gou Y
91. ChroKit: a Shiny-based framework for interactive analysis, visualization and integration of genomic data.
Nucleic Acids Res
2023 Jul 5
Croci O, Campaner S.
92. Prediction of protein structures, functions and interactions using the IntFOLD7, MultiFOLD and ModFOLDdock servers.
Nucleic Acids Res
2023 Jul 5
McGuffin LJ, Edmunds NS, Genc AG
93. Human AGEs: an interactive spatio-temporal visualization and database of human archeogenomics.
Nucleic Acids Res
2023 Jul 5
Ciecierski L, Stolarek I, Figlerowicz M.
94. ACFIS 2.0: an improved web-server for fragment-based drug discovery via a dynamic screening strategy.
Nucleic Acids Res
2023 Jul 5
Shi XX, Wang ZZ, Wang F
95. ProAct: quantifying the differential activity of biological processes in tissues, cells, and user-defined contexts.
Nucleic Acids Res
2023 Jul 5
Sharon M, Gruber G, Argov CM
96. Breeze 2.0: an interactive web-tool for visual analysis and comparison of drug response data.
Nucleic Acids Res
2023 Jul 5
Potdar S, Ianevski F, Ianevski A
97. MicrobiomeAnalyst 2.0: comprehensive statistical, functional and integrative analysis of microbiome data.
Nucleic Acids Res
2023 Jul 5
Lu Y, Zhou G, Ewald J
98. Abalign: a comprehensive multiple sequence alignment platform for B-cell receptor immune repertoires.
Nucleic Acids Res
2023 Jul 5
Zong F, Long C, Hu W
99. e-RNA: a collection of web-servers for the prediction and visualisation of RNA secondary structure and their functional features.
Nucleic Acids Res
2023 Jul 5
Tsybulskyi V, Semenchenko E, Meyer IM.
100. nCoVDock2: a docking server to predict the binding modes between COVID-19 targets and its potential ligands.
Nucleic Acids Res
2023 Jul 5
Liu K, Lu X, Shi H
101. STellaris: a web server for accurate spatial mapping of single cells based on spatial transcriptomics data.
Nucleic Acids Res
2023 Jul 5
Li X, Xiao C, Qi J
102. Tree Visualization By One Table (tvBOT): a web application for visualizing, modifying and annotating phylogenetic trees.
Nucleic Acids Res
2023 Jul 5
Xie J, Chen Y, Cai G
103. g:Profiler-interoperable web service for functional enrichment analysis and gene identifier mapping (2023 update).
Nucleic Acids Res
2023 Jul 5
Kolberg L, Raudvere U, Kuzmin I
104. Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
Nucleic Acids Res
2023 Jul 5
Barrett K, Hunt CJ, Lange L
105. PlasMapper 3.0-a web server for generating, editing, annotating and visualizing publication quality plasmid maps.
Nucleic Acids Res
2023 Jul 5
Wishart DS, Ren L, Leong-Sit J
106. GS-SMD server for steered molecular dynamics of peptide substrates in the active site of the γ-secretase complex.
Nucleic Acids Res
2023 Jul 5
Orzeł U, Pasznik P, Miszta P
107. Mol* Volumes and Segmentations: visualization and interpretation of cell imaging data alongside macromolecular structure data and biological annotations.
Nucleic Acids Res
2023 Jul 5
Chareshneu A, Midlik A, Ionescu CM
108. CRISPRimmunity: an interactive web server for CRISPR-associated Important Molecular events and Modulators Used in geNome edIting Tool identifYing.
Nucleic Acids Res
2023 Jul 5
Zhou F, Yu X, Gan R
109. 3D-GNOME 3.0: a three-dimensional genome modelling engine for analysing changes of promoter-enhancer contacts in the human genome.
Nucleic Acids Res
2023 Jul 5
Wlasnowolski M, Kadlof M, Sengupta K
110. PAE viewer: a webserver for the interactive visualization of the predicted aligned error for multimer structure predictions and crosslinks.
Nucleic Acids Res
2023 Jul 5
Elfmann C, Stülke J.
111. GeneRanger and TargetRanger: processed gene and protein expression levels across cells and tissues for target discovery.
Nucleic Acids Res
2023 Jul 5
Marino GB, Ngai M, Clarke DJB
112. FunARTS, the Fungal bioActive compound Resistant Target Seeker, an exploration engine for target-directed genome mining in fungi.
Nucleic Acids Res
2023 Jul 5
Yılmaz TM, Mungan MD, Berasategui A
113. FuzPred: a web server for the sequence-based prediction of the context-dependent binding modes of proteins.
Nucleic Acids Res
2023 Jul 5
Hatos A, Teixeira JMC, Barrera-Vilarmau S
114. On the rules of engagement for microRNAs targeting protein coding regions.
Nucleic Acids Res
2023 Jul 31
Sapkota S, Pillman KA, Dredge BK
115. BioLiP2: an updated structure database for biologically relevant ligand-protein interactions.
Nucleic Acids Res
2023 Jul 31
Zhang C, Zhang X, Freddolino PL
116. Dot1l cooperates with Npm1 to repress endogenous retrovirus MERVL in embryonic stem cells.
Nucleic Acids Res
2023 Jul 31
Zhao X, Li X, Sun H
117. Linking folding dynamics and function of SAM/SAH riboswitches at the single molecule level.
Nucleic Acids Res
2023 Jul 31
Liao TW, Huang L, Wilson TJ
118. Recovery of protein synthesis to assay DNA repair activity in transcribed genes in living cells and tissues.
Nucleic Acids Res
2023 Jul 31
van der Woude M, Davó-Martínez C, Thijssen KL
119. The HDAC6-RNF168 axis regulates H2A/H2A.X ubiquitination to enable double-strand break repair.
Nucleic Acids Res
2023 Jul 28
Qiu L, Xu W, Lu X
120. BLM helicase protein negatively regulates stress granule formation through unwinding RNA G-quadruplex structures.
Nucleic Acids Res
2023 Jul 28
Danino YM, Molitor L, Rosenbaum-Cohen T
121. Distinct characteristics of two types of alternative lengthening of telomeres in mouse embryonic stem cells.
Nucleic Acids Res
2023 Jul 27
Sung S, Kim E, Niida H
122. CSDE1 promotes miR-451 biogenesis.
Nucleic Acids Res
2023 Jul 26
Kakumani PK, Ko Y, Ramakrishna S
123. ISW1a modulates cohesin distribution in centromeric and pericentromeric regions.
Nucleic Acids Res
2023 Jul 24
Litwin I, Nowicka M, Markowska K
124. Characterization of RNA driven structural changes in full length RIG-I leading to its agonism or antagonism.
Nucleic Acids Res
2023 Jul 24
Sikorska J, Hou Y, Chiurazzi P
125. CREEPY: CRISPR-mediated editing of synthetic episomes in yeast.
Nucleic Acids Res
2023 Jul 21
Zhao Y, Coelho C, Lauer S
126. Structural and biochemical characterization of Schlafen11 N-terminal domain.
Nucleic Acids Res
2023 Jul 21
Hou P, Hao W, Qin B
127. ncOrtho: efficient and reliable identification of miRNA orthologs.
Nucleic Acids Res
2023 Jul 21
Langschied F, Leisegang MS, Brandes RP
128. Protein oxidation increases SAMHD1 binding ssDNA via its regulatory site.
Nucleic Acids Res
2023 Jul 21
Simermeyer TL, Batalis S, Rogers LC
129. A method to generate capture baits for targeted sequencing.
Nucleic Acids Res
2023 Jul 21
Sundararaman B, Vershinina AO, Hershauer S
130. Efficient and sensitive profiling of RNA-protein interactions using TLC-CLIP.
Nucleic Acids Res
2023 Jul 21
Ernst C, Duc J, Trono D.
131. IFI16 phase separation via multi-phosphorylation drives innate immune signaling.
Nucleic Acids Res
2023 Jul 21
Liu D, Lum KK, Treen N
132. A rapid protocol for ribosome profiling of low input samples.
Nucleic Acids Res
2023 Jul 21
Meindl A, Romberger M, Lehmann G
133. Thumb-domain dynamics modulate the functional repertoire of DNA-Polymerase IV (DinB).
Nucleic Acids Res
2023 Jul 21
Okeke DC, Lidman J, Matečko-Burmann I
134. eEF2 diphthamide modification restrains spurious frameshifting to maintain translational fidelity.
Nucleic Acids Res
2023 Jul 21
Shin BS, Ivanov IP, Kim JR
135. Design of synthetic promoters for cyanobacteria with generative deep-learning model.
Nucleic Acids Res
2023 Jul 21
Seo E, Choi YN, Shin YR
136. SIRT1 regulates DNA damage signaling through the PP4 phosphatase complex.
Nucleic Acids Res
2023 Jul 21
Rasti G, Becker M, Vazquez BN
137. Restriction-modification systems have shaped the evolution and distribution of plasmids across bacteria.
Nucleic Acids Res
2023 Jul 21
Shaw LP, Rocha EPC, MacLean RC.
138. Prolonging genetic circuit stability through adaptive evolution of overlapping genes.
Nucleic Acids Res
2023 Jul 21
Chlebek JL, Leonard SP, Kang-Yun C
139. Polycomb protein SCML2 mediates paternal epigenetic inheritance through sperm chromatin.
Nucleic Acids Res
2023 Jul 21
Sakashita A, Ooga M, Otsuka K
140. Cas1-Cas2 physically and functionally interacts with DnaK to modulate CRISPR Adaptation.
Nucleic Acids Res
2023 Jul 21
Killelea T, Dimude JU, He L
141. Sordarin bound eEF2 unlocks spontaneous forward and reverse translocation on CrPV IRES.
Nucleic Acids Res
2023 Jul 21
Ou Z, Petrov A.
142. Reducing the inherent auto-inhibitory interaction within the pegRNA enhances prime editing efficiency.
Nucleic Acids Res
2023 Jul 21
Ponnienselvan K, Liu P, Nyalile T
143. Achieving pan-microbiome biological insights via the dbBact knowledge base.
Nucleic Acids Res
2023 Jul 21
Amir A, Ozel E, Haberman Y
144. Single-molecule characterization of target search dynamics of DNA-binding proteins in DNA-condensed droplets.
Nucleic Acids Res
2023 Jul 21
Kamagata K, Kusano R, Kanbayashi S
145. Active in vivo translocation of the Methanosarcina mazei Gö1 Casposon.
Nucleic Acids Res
2023 Jul 21
Gehlert FO, Nickel L, Vakirlis N
146. Insights into a viral motor: the structure of the HK97 packaging termination assembly.
Nucleic Acids Res
2023 Jul 21
Hawkins DEDP, Bayfield OW, Fung HKH
147. Multiomic analysis of cohesin reveals that ZBTB transcription factors contribute to chromatin interactions.
Nucleic Acids Res
2023 Jul 21
Wang R, Xu Q, Wang C
148. Regulation of T7 gp2.5 binding dynamics by its C-terminal tail, template conformation and sequence.
Nucleic Acids Res
2023 Jul 21
Xu L, Cabanas-Danés J, Halma MTJ
149. Gene knockout inference with variational graph autoencoder learning single-cell gene regulatory networks.
Nucleic Acids Res
2023 Jul 21
Yang Y, Li G, Zhong Y
150. An amber-encoding helper phage for more efficient phage display of noncanonical amino acids.
Nucleic Acids Res
2023 Jul 21
Hampton JT, Cho CD, Coleman DD
151. Nanopore sensing reveals a preferential pathway for the co-translocational unfolding of a conjugative relaxase-DNA complex.
Nucleic Acids Res
2023 Jul 21
Valenzuela-Gómez F, Arechaga I, Cabezón E.
152. Phosphorylation status of MUS81 is a modifier of Olaparib sensitivity in BRCA2-deficient cells.
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Blandino F, Malacaria E, Figlioli C
153. A meet-up of acetyl phosphate and c-di-GMP modulates BldD activity for development and antibiotic production.
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Fu Y, Dong YQ, Shen JL
154. NOVA1 prevents overactivation of the unfolded protein response and facilitates chromatin access during human white adipogenesis.
Nucleic Acids Res
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Yang Z, Dong P, Cao J
155. Recruitment of transcription factor ETS1 to activated accessible regions promotes the transcriptional program of cilia genes.
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Zhang D, Zhang C, Zhu Y
156. Mechanistic insight into AP-endonuclease 1 cleavage of abasic sites at stalled replication fork mimics.
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Hoitsma NM, Norris J, Khoang TH
157. The THO complex counteracts TERRA R-loop-mediated telomere fragility in telomerase+ cells and telomeric recombination in ALT+ cells.
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Fernandes RV, Lingner J.
158. Mutational and structural analyses of UdgX: insights into the active site pocket architecture and its evolution.
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Aroli S, Woo EJ, Gopal B
159. On the accuracy of the epigenetic copy machine: comprehensive specificity analysis of the DNMT1 DNA methyltransferase.
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Adam S, Klingel V, Radde NE
160. High fidelity DNA strand-separation is the major specificity determinant in DNA methyltransferase CcrM's catalytic mechanism.
Nucleic Acids Res
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Konttinen O, Carmody J, Kurnik M
161. DUF2285 is a novel helix-turn-helix domain variant that orchestrates both activation and antiactivation of conjugative element transfer in proteobacteria.
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Jowsey WJ, Morris CRP, Hall DA
162. Stochastic scanning events on the GCN4 mRNA 5' untranslated region generate cell-to-cell heterogeneity in the yeast nutritional stress response.
Nucleic Acids Res
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Meng X, Reed A, Lai S
163. Trypanosome RNA helicase KREH2 differentially controls non-canonical editing and putative repressive structure via a novel proposed 'bifunctional' gRNA in mRNA A6.
Nucleic Acids Res
2023 Jul 21
Meehan J, McDermott SM, Ivens A
164. Dual chemical labeling enables nucleotide-resolution mapping of DNA abasic sites and common alkylation damage in human mitochondrial DNA.
Nucleic Acids Res
2023 Jul 21
Liu C, Le BH, Xu W
165. Multidimensional profiling reveals GATA1-modulated stage-specific chromatin states and functional associations during human erythropoiesis.
Nucleic Acids Res
2023 Jul 21
Li D, Zhao XY, Zhou S
166. Different SWI/SNF complexes coordinately promote R-loop- and RAD52-dependent transcription-coupled homologous recombination.
Nucleic Acids Res
2023 Jul 20
Davó-Martínez C, Helfricht A, Ribeiro-Silva C
167. Glycidamide-induced hypermutation in yeast single-stranded DNA reveals a ubiquitous clock-like mutational motif in humans.
Nucleic Acids Res
2023 Jul 20
Hudson KM, Klimczak LJ, Sterling JF
168. mRNA decapping activators Pat1 and Dhh1 regulate transcript abundance and translation to tune cellular responses to nutrient availability.
Nucleic Acids Res
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Vijjamarri AK, Gupta N, Onu C
169. RNA helicase DDX6 and scaffold protein GW182 in P-bodies promote biogenesis of stress granules.
Nucleic Acids Res
2023 Jul 10
Majerciak V, Zhou T, Kruhlak MJ
170. The structure and mechanism of action of a distinct class of dicistrovirus intergenic region IRESs.
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2023 Jul 10
Abaeva IS, Young C, Warsaba R
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