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1. The dynamic cycle of bacterial translation initiation factor IF3.
Nucleic Acids Res
2021 Jul 9
Nakamoto JA, Evangelista W, Vinogradova DS
2. NOVA2 regulates neural circRNA biogenesis.
Nucleic Acids Res
2021 Jul 9
Knupp D, Cooper DA, Saito Y
3. The DEAD-box RNA helicase RhlE2 is a global regulator of Pseudomonas aeruginosa lifestyle and pathogenesis.
Nucleic Acids Res
2021 Jul 9
Hausmann S, Gonzalez D, Geiser J
4. G-quadruplex binders as cytostatic modulators of innate immune genes in cancer cells.
Nucleic Acids Res
2021 Jul 9
Miglietta G, Russo M, Duardo RC
5. DnaB helicase dynamics in bacterial DNA replication resolved by single-molecule studies.
Nucleic Acids Res
2021 Jul 9
Spinks RR, Spenkelink LM, Stratmann SA
6. Stabilization of Hfq-mediated translational repression by the co-repressor Crc in Pseudomonas aeruginosa.
Nucleic Acids Res
2021 Jul 9
Malecka EM, Bassani F, Dendooven T
7. Single-round deoxyribozyme discovery.
Nucleic Acids Res
2021 Jul 9
Streckerová T, Kurfürst J, Curtis EA.
8. Prostate cancer-associated SPOP mutations lead to genomic instability through disruption of the SPOP-HIPK2 axis.
Nucleic Acids Res
2021 Jul 9
Jin X, Qing S, Li Q
9. Matrix-screening reveals a vast potential for direct protein-protein interactions among RNA binding proteins.
Nucleic Acids Res
2021 Jul 9
Lang B, Yang JS, Garriga-Canut M
10. A plasmid toolbox for controlled gene expression across the Proteobacteria.
Nucleic Acids Res
2021 Jul 9
Schuster LA, Reisch CR.
11. The ribosome assembly factor Nop53 has a structural role in the formation of nuclear pre-60S intermediates, affecting late maturation events.
Nucleic Acids Res
2021 Jul 9
Bagatelli FFM, de Luna Vitorino FN, da Cunha JPC
12. A new assay capturing chromosome fusions shows a protection trade-off at telomeres and NHEJ vulnerability to low-density ionizing radiation.
Nucleic Acids Res
2021 Jul 9
Pobiega S, Alibert O, Marcand S.
13. Intermolecular dark resonance energy transfer (DRET): upgrading fluorogenic DNA sensing.
Nucleic Acids Res
2021 Jul 9
Barnoin G, Shaya J, Richert L
14. Power-law behavior of transcription factor dynamics at the single-molecule level implies a continuum affinity model.
Nucleic Acids Res
2021 Jul 9
Garcia DA, Fettweis G, Presman DM
15. Chemical and photochemical error rates in light-directed synthesis of complex DNA libraries.
Nucleic Acids Res
2021 Jul 9
Lietard J, Leger A, Erlich Y
16. Molecular characterization of both transesterification reactions of the group II intron circularization pathway.
Nucleic Acids Res
2021 Jul 9
LaRoche-Johnston F, Monat C, Verreault E
17. Quasi-essentiality of RNase Y in Bacillus subtilis is caused by its critical role in the control of mRNA homeostasis.
Nucleic Acids Res
2021 Jul 9
Benda M, Woelfel S, Faßhauer P
18. Identification of a novel endogenous long non-coding RNA that inhibits selenoprotein P translation.
Nucleic Acids Res
2021 Jul 9
Mita Y, Uchida R, Yasuhara S
19. Acetylation of the CspA family protein CspC controls the type III secretion system through translational regulation of exsA in Pseudomonas aeruginosa.
Nucleic Acids Res
2021 Jul 9
Li S, Weng Y, Li X
20. Mechanical diversity and folding intermediates of parallel-stranded G-quadruplexes with a bulge.
Nucleic Acids Res
2021 Jul 9
Zhang Y, Cheng Y, Chen J
21. Three-dimensional structure of a flavivirus dumbbell RNA reveals molecular details of an RNA regulator of replication.
Nucleic Acids Res
2021 Jul 9
Akiyama BM, Graham ME, O Donoghue Z
22. Phosphorylation of a reinitiation supporting protein, RISP, determines its function in translation reinitiation.
Nucleic Acids Res
2021 Jul 9
Mancera-Martínez E, Dong Y, Makarian J
23. Human tRNAs with inosine 34 are essential to efficiently translate eukarya-specific low-complexity proteins.
Nucleic Acids Res
2021 Jul 9
Torres AG, Rodríguez-Escribà M, Marcet-Houben M
24. sRNA-mediated RNA processing regulates bacterial cell division.
Nucleic Acids Res
2021 Jul 9
Grützner J, Remes B, Eisenhardt KMH
25. Taxonomic analysis of metagenomic data with kASA.
Nucleic Acids Res
2021 Jul 9
Weging S, Gogol-Döring A, Grosse I.
26. Kinetic sequencing (k-Seq) as a massively parallel assay for ribozyme kinetics: utility and critical parameters.
Nucleic Acids Res
2021 Jul 9
Shen Y, Pressman A, Janzen E
27. TnpAREP and REP sequences dissemination in bacterial genomes: REP recognition determinants.
Nucleic Acids Res
2021 Jul 9
Corneloup A, Caumont-Sarcos A, Kamgoue A
28. Rrp1 translocase and ubiquitin ligase activities restrict the genome destabilising effects of Rad51 in fission yeast.
Nucleic Acids Res
2021 Jul 9
Muraszko J, Kramarz K, Argunhan B
29. INO80 promotes H2A.Z occupancy to regulate cell fate transition in pluripotent stem cells.
Nucleic Acids Res
2021 Jul 9
Yu H, Wang J, Lackford B
30. RNase H1C collaborates with ssDNA binding proteins WHY1/3 and recombinase RecA1 to fulfill the DNA damage repair in Arabidopsis chloroplasts.
Nucleic Acids Res
2021 Jul 9
Wang W, Li K, Yang Z
31. B-CePs as cross-linking probes for the investigation of RNA higher-order structure.
Nucleic Acids Res
2021 Jul 9
Sosic A, Göttlich R, Fabris D
32. Beyond small molecules: targeting G-quadruplex structures with oligonucleotides and their analogues.
Nucleic Acids Res
2021 Jul 9
Cadoni E, De Paepe L, Manicardi A
33. MrHAMER yields highly accurate single molecule viral sequences enabling analysis of intra-host evolution.
Nucleic Acids Res
2021 Jul 9
Gallardo CM, Wang S, Montiel-Garcia DJ
34. DNA molecular combing-based replication fork directionality profiling.
Nucleic Acids Res
2021 Jul 9
Blin M, Lacroix L, Petryk N
35. Discovery of a pre-mRNA structural scaffold as a contributor to the mammalian splicing code.
Nucleic Acids Res
2021 Jul 9
Saha K, Fernandez MM, Biswas T
36. Formation of frameshift-stimulating RNA pseudoknots is facilitated by remodeling of their folding intermediates.
Nucleic Acids Res
2021 Jul 9
Hsu CF, Chang KC, Chen YL
37. Structure of the mammalian adenine DNA glycosylase MUTYH: insights into the base excision repair pathway and cancer.
Nucleic Acids Res
2021 Jul 9
Nakamura T, Okabe K, Hirayama S
38. HP1021 is a redox switch protein identified in Helicobacter pylori.
Nucleic Acids Res
2021 Jul 9
Szczepanowski P, Noszka M, Żyła-Uklejewicz D
39. Alternative dimerization is required for activity and inhibition of the HEPN ribonuclease RnlA.
Nucleic Acids Res
2021 Jul 9
Garcia-Rodriguez G, Charlier D, Wilmaerts D
40. Upregulation of RNA cap methyltransferase RNMT drives ribosome biogenesis during T cell activation.
Nucleic Acids Res
2021 Jul 9
Galloway A, Kaskar A, Ditsova D
41. Mechanistic insights into translation inhibition by aminoglycoside antibiotic arbekacin.
Nucleic Acids Res
2021 Jul 9
Parajuli NP, Mandava CS, Pavlov MY
42. Insights into xanthine riboswitch structure and metal ion-mediated ligand recognition.
Nucleic Acids Res
2021 Jul 9
Xu X, Egger M, Chen H
43. Single-molecule imaging of epigenetic complexes in living cells: insights from studies on Polycomb group proteins.
Nucleic Acids Res
2021 Jul 9
Brown K, Andrianakos H, Ingersoll S
44. Efficient splicing-based RNA regulators for tetracycline-inducible gene expression in human cell culture and C. elegans.
Nucleic Acids Res
2021 Jul 9
Finke M, Brecht D, Stifel J
45. The phase separation-dependent FUS interactome reveals nuclear and cytoplasmic function of liquid-liquid phase separation.
Nucleic Acids Res
2021 Jul 21
Reber S, Jutzi D, Lindsay H
46. Circular L-RNA aptamer promotes target recognition and controls gene activity.
Nucleic Acids Res
2021 Jul 21
Ji D, Lyu K, Zhao H
47. Genome-wide CRISPR screens reveal cyclin C as synthetic survival target of BRCA2.
Nucleic Acids Res
2021 Jul 21
Tang M, Pei G, Su D
48. Efficient multiplexed gene regulation in Saccharomyces cerevisiae using dCas12a.
Nucleic Acids Res
2021 Jul 21
Ciurkot K, Gorochowski TE, Roubos JA
49. The synaptonemal complex central region modulates crossover pathways and feedback control of meiotic double-strand break formation.
Nucleic Acids Res
2021 Jul 21
Lee MS, Higashide MT, Choi H
50. Replication catastrophe induced by cyclic hypoxia leads to increased APOBEC3B activity.
Nucleic Acids Res
2021 Jul 21
Bader SB, Ma TS, Simpson CJ
51. Assembly of higher-order SMN oligomers is essential for metazoan viability and requires an exposed structural motif present in the YG zipper dimer.
Nucleic Acids Res
2021 Jul 21
Gupta K, Wen Y, Ninan NS
52. Diverse high-affinity DNA aptamers for wild-type and B.1.1.7 SARS-CoV-2 spike proteins from a pre-structured DNA library.
Nucleic Acids Res
2021 Jul 21
Li J, Zhang Z, Gu J
53. NMR structure of the Vibrio vulnificus ribosomal protein S1 domains D3 and D4 provides insights into molecular recognition of single-stranded RNAs.
Nucleic Acids Res
2021 Jul 21
Qureshi NS, Matzel T, Cetiner EC
54. Transcription factor RFX7 governs a tumor suppressor network in response to p53 and stress.
Nucleic Acids Res
2021 Jul 21
Coronel L, Riege K, Schwab K
55. Recombination machinery engineering facilitates metabolic engineering of the industrial yeast Pichia pastoris.
Nucleic Acids Res
2021 Jul 21
Cai P, Duan X, Wu X
56. A type III-A CRISPR-Cas system mediates co-transcriptional DNA cleavage at the transcriptional bubbles in close proximity to active effectors.
Nucleic Acids Res
2021 Jul 21
Lin J, Shen Y, Ni J
57. PARP1 and CHK1 coordinate PLK1 enzymatic activity during the DNA damage response to promote homologous recombination-mediated repair.
Nucleic Acids Res
2021 Jul 21
Peng B, Shi R, Bian J
58. Reduction of lamin B receptor levels by miR-340-5p disrupts chromatin, promotes cell senescence and enhances senolysis.
Nucleic Acids Res
2021 Jul 21
Herman AB, Anerillas C, Harris SC
59. Cell-free genomics reveal intrinsic, cooperative and competitive determinants of chromatin interactions.
Nucleic Acids Res
2021 Jul 21
Eggers N, Becker PB.
60. Structure of the bacteriophage PhiKZ non-virion RNA polymerase.
Nucleic Acids Res
2021 Jul 21
deYMartín Garrido N, Orekhova M, Lai Wan Loong YTE
61. Locus-specific transcription silencing at the FHIT gene suppresses replication stress-induced copy number variant formation and associated replication delay.
Nucleic Acids Res
2021 Jul 21
Park SH, Bennett-Baker P, Ahmed S
62. Structure specific DNA recognition by the SLX1-SLX4 endonuclease complex.
Nucleic Acids Res
2021 Jul 21
Xu X, Wang M, Sun J
63. rigrag: high-resolution mapping of genic targeting preferences during HIV-1 integration in vitro and in vivo.
Nucleic Acids Res
2021 Jul 21
Bedwell GJ, Jang S, Li W
64. A comprehensive review of m6A/m6Am RNA methyltransferase structures.
Nucleic Acids Res
2021 Jul 21
Oerum S, Meynier V, Catala M
65. Argonaute integrated single-tube PCR system enables supersensitive detection of rare mutations.
Nucleic Acids Res
2021 Jul 21
Liu Q, Guo X, Xun G
66. Strand-specific effect of Rad26 and TFIIS in rescuing transcriptional arrest by CAG trinucleotide repeat slip-outs.
Nucleic Acids Res
2021 Jul 21
Xu J, Chong J, Wang D.
67. deepBlink: threshold-independent detection and localization of diffraction-limited spots.
Nucleic Acids Res
2021 Jul 21
Eichenberger BT, Zhan Y, Rempfler M
68. Evidence for a chromosome origin unwinding system broadly conserved in bacteria.
Nucleic Acids Res
2021 Jul 21
Pelliciari S, Dong MJ, Gao F
69. Evolution of plant telomerase RNAs: farther to the past, deeper to the roots.
Nucleic Acids Res
2021 Jul 21
Fajkus P, Kilar A, Nelson ADL
70. DNA methylation by three Type I restriction modification systems of Escherichia coli does not influence gene regulation of the host bacterium.
Nucleic Acids Res
2021 Jul 21
Mehershahi KS, Chen SL.
71. Impact of the interplay between stemness features, p53 and pol iota on replication pathway choices.
Nucleic Acids Res
2021 Jul 21
Ihle M, Biber S, Schroeder IS
72. Architecture and evolution of subtelomeres in the unicellular green alga Chlamydomonas reinhardtii.
Nucleic Acids Res
2021 Jul 21
Chaux-Jukic F, O'Donnell S, Craig RJ
73. Blasticidin S inhibits mammalian translation and enhances production of protein encoded by nonsense mRNA.
Nucleic Acids Res
2021 Jul 21
Powers KT, Stevenson-Jones F, Yadav SKN
74. dSPRINT: predicting DNA, RNA, ion, peptide and small molecule interaction sites within protein domains.
Nucleic Acids Res
2021 Jul 21
Etzion-Fuchs A, Todd DA, Singh M.
75. A self-attention model for inferring cooperativity between regulatory features.
Nucleic Acids Res
2021 Jul 21
Ullah F, Ben-Hur A.
76. Endonuclease enrichment TAPS for cost-effective genome-wide base-resolution DNA methylation detection.
Nucleic Acids Res
2021 Jul 21
Cheng J, Siejka-Zielińska P, Liu Y
77. 5-Fluorouracil blocks quorum-sensing of biofilm-embedded methicillin-resistant Staphylococcus aureus in mice.
Nucleic Acids Res
2021 Jul 21
Sedlmayer F, Woischnig AK, Unterreiner V
78. Identification and structural analysis of the Schizosaccharomyces pombe SMN complex.
Nucleic Acids Res
2021 Jul 21
Veepaschit J, Viswanathan A, Bordonné R
79. Triplex-forming properties and enzymatic incorporation of a base-modified nucleotide capable of duplex DNA recognition at neutral pH.
Nucleic Acids Res
2021 Jul 21
Rusling DA.
80. SARS-CoV-2 Nsp3 unique domain SUD interacts with guanine quadruplexes and G4-ligands inhibit this interaction.
Nucleic Acids Res
2021 Jul 21
Lavigne M, Helynck O, Rigolet P
81. Combinatorial analysis of translation dynamics reveals eIF2 dependence of translation initiation at near-cognate codons.
Nucleic Acids Res
2021 Jul 21
Ichihara K, Matsumoto A, Nishida H
82. A small-molecule chemical interface for molecular programs.
Nucleic Acids Res
2021 Jul 21
Shenshin VA, Lescanne C, Gines G
83. Phosphorylation of the HP1β hinge region sequesters KAP1 in heterochromatin and promotes the exit from naïve pluripotency.
Nucleic Acids Res
2021 Jul 21
Qin W, Ugur E, Mulholland CB
84. GGGCTA repeats can fold into hairpins poorly unfolded by replication protein A: a possible origin of the length-dependent instability of GGGCTA variant repeats in human telomeres.
Nucleic Acids Res
2021 Jul 21
Chatain J, Blond A, Phan AT
85. Pax7 pioneer factor action requires both paired and homeo DNA binding domains.
Nucleic Acids Res
2021 Jul 21
Pelletier A, Mayran A, Gouhier A
86. iTARGEX analysis of yeast deletome reveals novel regulators of transcriptional buffering in S phase and protein turnover.
Nucleic Acids Res
2021 Jul 21
Huang JH, Liao YR, Lin TC
87. Epitranscriptomic editing of the RNA N6-methyladenosine modification by dCasRx conjugated methyltransferase and demethylase.
Nucleic Acids Res
2021 Jul 21
Xia Z, Tang M, Ma J
88. Functional interplay of histone lysine 2-hydroxyisobutyrylation and acetylation in Arabidopsis under dark-induced starvation.
Nucleic Acids Res
2021 Jul 21
Zheng L, Li C, Ma X
89. The emerging determinants of replication fork stability.
Nucleic Acids Res
2021 Jul 21
Thakar T, Moldovan GL.
90. Measuring nonhomologous end-joining, homologous recombination and alternative end-joining simultaneously at an endogenous locus in any transfectable human cell.
Nucleic Acids Res
2021 Jul 21
Hussain SS, Majumdar R, Moore GM
91. KOBAS-i: intelligent prioritization and exploratory visualization of biological functions for gene enrichment analysis.
Nucleic Acids Res
2021 Jul 2
Bu D, Luo H, Huo P
92. GPCRsignal: webserver for analysis of the interface between G-protein-coupled receptors and their effector proteins by dynamics and mutations.
Nucleic Acids Res
2021 Jul 2
Miszta P, Pasznik P, Niewieczerzał S
93. pegIT - a web-based design tool for prime editing.
Nucleic Acids Res
2021 Jul 2
Anderson MV, Haldrup J, Thomsen EA
94. Mergeomics 2.0: a web server for multi-omics data integration to elucidate disease networks and predict therapeutics.
Nucleic Acids Res
2021 Jul 2
Ding J, Blencowe M, Nghiem T
95. NetGO 2.0: improving large-scale protein function prediction with massive sequence, text, domain, family and network information.
Nucleic Acids Res
2021 Jul 2
Yao S, You R, Wang S
96. Thunor: visualization and analysis of high-throughput dose-response datasets.
Nucleic Acids Res
2021 Jul 2
Lubbock ALR, Harris LA, Quaranta V
97. Graphery: interactive tutorials for biological network algorithms.
Nucleic Acids Res
2021 Jul 2
Zeng H, Zhang J, Preising GA
98. MyCLADE: a multi-source domain annotation server for sequence functional exploration.
Nucleic Acids Res
2021 Jul 2
Vicedomini R, Blachon C, Oteri F
99. AnnotSV and knotAnnotSV: a web server for human structural variations annotations, ranking and analysis.
Nucleic Acids Res
2021 Jul 2
Geoffroy V, Guignard T, Kress A
100. MetaboAnalyst 5.0: narrowing the gap between raw spectra and functional insights.
Nucleic Acids Res
2021 Jul 2
Pang Z, Chong J, Zhou G
101. ProteinTools: a toolkit to analyze protein structures.
Nucleic Acids Res
2021 Jul 2
Ferruz N, Schmidt S, Höcker B.
102. KEA3: improved kinase enrichment analysis via data integration.
Nucleic Acids Res
2021 Jul 2
Kuleshov MV, Xie Z, London ABK
103. eVITTA: a web-based visualization and inference toolbox for transcriptome analysis.
Nucleic Acids Res
2021 Jul 2
Cheng X, Yan J, Liu Y
104. PERCEPTRON: an open-source GPU-accelerated proteoform identification pipeline for top-down proteomics.
Nucleic Acids Res
2021 Jul 2
Khalid MF, Iman K, Ghafoor A
105. The Dockstore: enhancing a community platform for sharing reproducible and accessible computational protocols.
Nucleic Acids Res
2021 Jul 2
Yuen D, Cabansay L, Duncan A
106. ProteinLens: a web-based application for the analysis of allosteric signalling on atomistic graphs of biomolecules.
Nucleic Acids Res
2021 Jul 2
Mersmann SF, Strömich L, Song FJ
107. LZerD webserver for pairwise and multiple protein-protein docking.
Nucleic Acids Res
2021 Jul 2
Christoffer C, Chen S, Bharadwaj V
108. Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures.
Nucleic Acids Res
2021 Jul 2
Sehnal D, Bittrich S, Deshpande M
109. CeLaVi: an interactive cell lineage visualization tool.
Nucleic Acids Res
2021 Jul 2
Salvador-Martínez I, Grillo M, Averof M
110. mmCSM-PPI: predicting the effects of multiple point mutations on protein-protein interactions.
Nucleic Acids Res
2021 Jul 2
Rodrigues CHM, Pires DEV, Ascher DB.
111. ADMETlab 2.0: an integrated online platform for accurate and comprehensive predictions of ADMET properties.
Nucleic Acids Res
2021 Jul 2
Xiong G, Wu Z, Yi J
112. miRMaster 2.0: multi-species non-coding RNA sequencing analyses at scale.
Nucleic Acids Res
2021 Jul 2
Fehlmann T, Kern F, Laham O
113. iNetModels 2.0: an interactive visualization and database of multi-omics data.
Nucleic Acids Res
2021 Jul 2
Arif M, Zhang C, Li X
114. catRAPID omics v2.0: going deeper and wider in the prediction of protein-RNA interactions.
Nucleic Acids Res
2021 Jul 2
Armaos A, Colantoni A, Proietti G
115. Mechnetor: a web server for exploring protein mechanism and the functional context of genetic variants.
Nucleic Acids Res
2021 Jul 2
González-Sánchez JC, Ibrahim MFR, Leist IC
116. b2bTools: online predictions for protein biophysical features and their conservation.
Nucleic Acids Res
2021 Jul 2
Kagami LP, Orlando G, Raimondi D
117. ncFANs v2.0: an integrative platform for functional annotation of non-coding RNAs.
Nucleic Acids Res
2021 Jul 2
Zhang Y, Bu D, Huo P
118. MTR3D: identifying regions within protein tertiary structures under purifying selection.
Nucleic Acids Res
2021 Jul 2
Silk M, Pires DEV, Rodrigues CHM
119. snpXplorer: a web application to explore human SNP-associations and annotate SNP-sets.
Nucleic Acids Res
2021 Jul 2
Tesi N, van der Lee S, Hulsman M
120. Estimage: a webserver hub for the computation of methylation age.
Nucleic Acids Res
2021 Jul 2
Di Lena P, Sala C, Nardini C.
121. BRIO: a web server for RNA sequence and structure motif scan.
Nucleic Acids Res
2021 Jul 2
Guarracino A, Pepe G, Ballesio F
122. CPA: a web-based platform for consensus pathway analysis and interactive visualization.
Nucleic Acids Res
2021 Jul 2
Nguyen H, Tran D, Galazka JM
123. LigAdvisor: a versatile and user-friendly web-platform for drug design.
Nucleic Acids Res
2021 Jul 2
Pinzi L, Tinivella A, Gagliardelli L
124. DomainViz: intuitive visualization of consensus domain distributions across groups of proteins.
Nucleic Acids Res
2021 Jul 2
Schläpfer P, Mehta D, Ridderikhoff C
125. RunBioSimulations: an extensible web application that simulates a wide range of computational modeling frameworks, algorithms, and formats.
Nucleic Acids Res
2021 Jul 2
Shaikh B, Marupilla G, Wilson M
126. Amino Acid Interactions (INTAA) web server v2.0: a single service for computation of energetics and conservation in biomolecular 3D structures.
Nucleic Acids Res
2021 Jul 2
Vymětal J, Jakubec D, Galgonek J
127. ReFOLD3: refinement of 3D protein models with gradual restraints based on predicted local quality and residue contacts.
Nucleic Acids Res
2021 Jul 2
Adiyaman R, McGuffin LJ.
128. OxDNA.org: a public webserver for coarse-grained simulations of DNA and RNA nanostructures.
Nucleic Acids Res
2021 Jul 2
Poppleton E, Romero R, Mallya A
129. ProteoVision: web server for advanced visualization of ribosomal proteins.
Nucleic Acids Res
2021 Jul 2
Penev PI, McCann HM, Meade CD
130. SynLeGG: analysis and visualization of multiomics data for discovery of cancer 'Achilles Heels' and gene function relationships.
Nucleic Acids Res
2021 Jul 2
Wappett M, Harris A, Lubbock ALR
131. CoffeeProt: an online tool for correlation and functional enrichment of systems genetics data.
Nucleic Acids Res
2021 Jul 2
Molendijk J, Seldin MM, Parker BL.
132. BENZ WS: the Bologna ENZyme Web Server for four-level EC number annotation.
Nucleic Acids Res
2021 Jul 2
Baldazzi D, Savojardo C, Martelli PL
133. Proteo3Dnet: a web server for the integration of structural information with interactomics data.
Nucleic Acids Res
2021 Jul 2
Postic G, Andreani J, Marcoux J
134. Trips-Viz: an environment for the analysis of public and user-generated ribosome profiling data.
Nucleic Acids Res
2021 Jul 2
Kiniry SJ, Judge CE, Michel AM
135. Recognizing and validating ligands with CheckMyBlob.
Nucleic Acids Res
2021 Jul 2
Brzezinski D, Porebski PJ, Kowiel M
136. Arena3Dweb: interactive 3D visualization of multilayered networks.
Nucleic Acids Res
2021 Jul 2
Karatzas E, Baltoumas FA, Panayiotou NA
137. Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation.
Nucleic Acids Res
2021 Jul 2
Letunic I, Bork P.
138. TISIGNER.com: web services for improving recombinant protein production.
Nucleic Acids Res
2021 Jul 2
Bhandari BK, Lim CS, Gardner PP.
139. G2PDeep: a web-based deep-learning framework for quantitative phenotype prediction and discovery of genomic markers.
Nucleic Acids Res
2021 Jul 2
Zeng S, Mao Z, Ren Y
140. eSkip-Finder: a machine learning-based web application and database to identify the optimal sequences of antisense oligonucleotides for exon skipping.
Nucleic Acids Res
2021 Jul 2
Chiba S, Lim KRQ, Sheri N
141. DrugComb update: a more comprehensive drug sensitivity data repository and analysis portal.
Nucleic Acids Res
2021 Jul 2
Zheng S, Aldahdooh J, Shadbahr T
142. GEPIA2021: integrating multiple deconvolution-based analysis into GEPIA.
Nucleic Acids Res
2021 Jul 2
Li C, Tang Z, Zhang W
143. LipidSig: a web-based tool for lipidomic data analysis.
Nucleic Acids Res
2021 Jul 2
Lin WJ, Shen PC, Liu HC
144. GalaxyHeteromer: protein heterodimer structure prediction by template-based and ab initio docking.
Nucleic Acids Res
2021 Jul 2
Park T, Won J, Baek M
145. ProLint: a web-based framework for the automated data analysis and visualization of lipid-protein interactions.
Nucleic Acids Res
2021 Jul 2
Sejdiu BI, Tieleman DP.
146. The gutSMASH web server: automated identification of primary metabolic gene clusters from the gut microbiota.
Nucleic Acids Res
2021 Jul 2
Pascal Andreu V, Roel-Touris J, Dodd D
147. OmicsAnalyst: a comprehensive web-based platform for visual analytics of multi-omics data.
Nucleic Acids Res
2021 Jul 2
Zhou G, Ewald J, Xia J.
148. pLannotate: engineered plasmid annotation.
Nucleic Acids Res
2021 Jul 2
McGuffie MJ, Barrick JE.
149. Vaxign2: the second generation of the first Web-based vaccine design program using reverse vaccinology and machine learning.
Nucleic Acids Res
2021 Jul 2
Ong E, Cooke MF, Huffman A
150. OpenAnnotate: a web server to annotate the chromatin accessibility of genomic regions.
Nucleic Acids Res
2021 Jul 2
Chen S, Liu Q, Cui X
151. ModFOLD8: accurate global and local quality estimates for 3D protein models.
Nucleic Acids Res
2021 Jul 2
McGuffin LJ, Aldowsari FMF, Alharbi SMA
152. LipidSuite: interactive web server for lipidomics differential and enrichment analysis.
Nucleic Acids Res
2021 Jul 2
Mohamed A, Hill MM.
153. PE-Designer and PE-Analyzer: web-based design and analysis tools for CRISPR prime editing.
Nucleic Acids Res
2021 Jul 2
Hwang GH, Jeong YK, Habib O
154. VirtualTaste: a web server for the prediction of organoleptic properties of chemical compounds.
Nucleic Acids Res
2021 Jul 2
Fritz F, Preissner R, Banerjee P.
155. Expasy, the Swiss Bioinformatics Resource Portal, as designed by its users.
Nucleic Acids Res
2021 Jul 2
Duvaud S, Gabella C, Lisacek F
156. CRISPRloci: comprehensive and accurate annotation of CRISPR-Cas systems.
Nucleic Acids Res
2021 Jul 2
Alkhnbashi OS, Mitrofanov A, Bonidia R
157. TIMEOR: a web-based tool to uncover temporal regulatory mechanisms from multi-omics data.
Nucleic Acids Res
2021 Jul 2
Conard AM, Goodman N, Hu Y
158. DGLinker: flexible knowledge-graph prediction of disease-gene associations.
Nucleic Acids Res
2021 Jul 2
Hu J, Lepore R, Dobson RJB
159. Voronoia 4-ever.
Nucleic Acids Res
2021 Jul 2
Staritzbichler R, Ristic N, Goede A
160. The COVID-19 Data Portal: accelerating SARS-CoV-2 and COVID-19 research through rapid open access data sharing.
Nucleic Acids Res
2021 Jul 2
Harrison PW, Lopez R, Rahman N
161. IUPred3: prediction of protein disorder enhanced with unambiguous experimental annotation and visualization of evolutionary conservation.
Nucleic Acids Res
2021 Jul 2
Erdős G, Pajkos M, Dosztányi Z.
162. DeepFun: a deep learning sequence-based model to decipher non-coding variant effect in a tissue- and cell type-specific manner.
Nucleic Acids Res
2021 Jul 2
Pei G, Hu R, Jia P
163. Aviator: a web service for monitoring the availability of web services.
Nucleic Acids Res
2021 Jul 2
Fehlmann T, Kern F, Hirsch P
164. PlantDeepSEA, a deep learning-based web service to predict the regulatory effects of genomic variants in plants.
Nucleic Acids Res
2021 Jul 2
Zhao H, Tu Z, Liu Y
165. Preselector.uni-jena.de: optimize your cloning-a resource for identifying restriction enzymes for preselection reactions.
Nucleic Acids Res
2021 Jul 2
Gühmann M, Reuter S, Hartung J
166. DeepGOWeb: fast and accurate protein function prediction on the (Semantic) Web.
Nucleic Acids Res
2021 Jul 2
Kulmanov M, Zhapa-Camacho F, Hoehndorf R.
167. CNVxplorer: a web tool to assist clinical interpretation of CNVs in rare disease patients.
Nucleic Acids Res
2021 Jul 2
Requena F, Abdallah HH, García A
168. miRTargetLink 2.0-interactive miRNA target gene and target pathway networks.
Nucleic Acids Res
2021 Jul 2
Kern F, Aparicio-Puerta E, Li Y
169. DeepRefiner: high-accuracy protein structure refinement by deep network calibration.
Nucleic Acids Res
2021 Jul 2
Shuvo MH, Gulfam M, Bhattacharya D.
170. PredictProtein - Predicting Protein Structure and Function for 29 Years.
Nucleic Acids Res
2021 Jul 2
Bernhofer M, Dallago C, Karl T
171. EDGAR3.0: comparative genomics and phylogenomics on a scalable infrastructure.
Nucleic Acids Res
2021 Jul 2
Dieckmann MA, Beyvers S, Nkouamedjo-Fankep RC
172. DoChaP: the domain change presenter.
Nucleic Acids Res
2021 Jul 2
Gal-Oz ST, Haiat N, Eliyahu D
173. antiSMASH 6.0: improving cluster detection and comparison capabilities.
Nucleic Acids Res
2021 Jul 2
Blin K, Shaw S, Kloosterman AM
174. InterEvDock3: a combined template-based and free docking server with increased performance through explicit modeling of complex homologs and integration of covariation-based contact maps.
Nucleic Acids Res
2021 Jul 2
Quignot C, Postic G, Bret H
175. ProteoSign v2: a faster and evolved user-friendly online tool for statistical analyses of differential proteomics.
Nucleic Acids Res
2021 Jul 2
Theodorakis E, Antonakis AN, Baltsavia I
176. PLIP 2021: expanding the scope of the protein-ligand interaction profiler to DNA and RNA.
Nucleic Acids Res
2021 Jul 2
Adasme MF, Linnemann KL, Bolz SN
177. LitSuggest: a web-based system for literature recommendation and curation using machine learning.
Nucleic Acids Res
2021 Jul 2
Allot A, Lee K, Chen Q
178. IPC 2.0: prediction of isoelectric point and pKa dissociation constants.
Nucleic Acids Res
2021 Jul 2
Kozlowski LP.
179. MutationTaster2021.
Nucleic Acids Res
2021 Jul 2
Steinhaus R, Proft S, Schuelke M
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